Co-expression analysis

Gene ID Contig13986_at
Gene name
Homology with ArabidopsisSimilar to At1g15520: PDR12 (PLEIOTROPIC DRUG RESISTANCE 12) (HF=4e-33)
Module size 6 genes
NF 0.72
%ile 92.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5774.90.91Contig13986_atContig13986--4e-33At1g15520PDR12 (PLEIOTROPIC DRUG RESISTANCE 12)O.I.H.G.S.X.
0.8394.00.90Contig4756_atContig4756--2e-75At2g24270ALDH11A3O.I.H.G.S.X.
0.7388.70.91Contig17469_atContig17469--2e+0At5g56795MT1BO.I.H.G.S.X.
0.7187.10.91Contig3257_atContig3257--2e+0At3g51030ATTRX1O.I.H.G.S.X.
0.6784.70.94HY10H19u_s_atHY10H19u--5e+0At5g54740protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.5369.70.90Contig3221_atContig3221--2e-5At5g64040PSANO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
29.799.9GSM282040Malting_kilned_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
29.599.9GSM282038Malting_kilned_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
12.599.4GSM213436Barley seeds with P. aeruginosa PAO1 for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
11.599.3GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
10.999.2GSM213443Barley seeds with P. aeruginosa PA5021 mutant for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
10.299.1GSM213441Barley seeds control in Hoagland solution for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
9.699.0GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.598.2GSM261060Xantha b-12 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
5.697.7GSM419981Seed_Rep1GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
5.697.7GSM440975Control seed_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.11191.1.A1_at, orthologous to the query gene, Contig13986_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5976.1Zm.11191.1.A1_atAt1g15520--6e-7At1g15520PDR12 (PLEIOTROPIC DRUG RESISTANCE 12)O.I.H.G.S.X.
0.8395.6Zm.6398.1.A1_atAt1g15520transposon protein Mutator sub-class-3e+0At2g43660glycosyl hydrolase family protein 17O.I.H.G.S.X.
0.6077.8Zm.157.1.S1_atAt1g15520catalase2-3e-22At4g35090CAT2 (CATALASE 2)O.I.H.G.S.X.
0.5065.7ZmAffx.744.1.S1_atAt1g15520--1e-1At1g48300unknown proteinO.I.H.G.S.X.
0.4048.5Zm.5008.1.A1_atAt1g15520hypothetical protein LOC100275589-2e-29At5g54870unknown proteinO.I.H.G.S.X.
0.3437.2Zm.16861.2.S1_atAt1g15520L-ascorbate oxidase-7e-4At1g55570sks12 (SKU5 Similar 12)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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