Co-expression analysis

Gene ID	Contig13986_at
Gene name
Homology with Arabidopsis	Similar to At1g15520: PDR12 (PLEIOTROPIC DRUG RESISTANCE 12) (HF=4e-33)
Module size	6 genes
NF	0.72
%ile	92.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	74.9	0.91	Contig13986_at	Contig13986	-	-	4e-33	At1g15520	PDR12 (PLEIOTROPIC DRUG RESISTANCE 12)	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.90	Contig4756_at	Contig4756	-	-	2e-75	At2g24270	ALDH11A3	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.91	Contig17469_at	Contig17469	-	-	2e+0	At5g56795	MT1B	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.91	Contig3257_at	Contig3257	-	-	2e+0	At3g51030	ATTRX1	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.94	HY10H19u_s_at	HY10H19u	-	-	5e+0	At5g54740	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.90	Contig3221_at	Contig3221	-	-	2e-5	At5g64040	PSAN	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
29.7	99.9	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
29.5	99.9	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
12.5	99.4	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
11.5	99.3	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
10.9	99.2	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
10.2	99.1	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
9.6	99.0	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.5	98.2	GSM261060	Xantha b-12 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.6	97.7	GSM419981	Seed_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.6	97.7	GSM440975	Control seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.90300.1.S1_s_at, orthologous to the query gene, Contig13986_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	79.5	GmaAffx.90300.1.S1_s_at	At1g15520	PDR-like ABC-transporter	-	2e-2	At1g15520	PDR12 (PLEIOTROPIC DRUG RESISTANCE 12)	O.I.	H.G.	S.X.	Please select
0.61	81.8	Gma.10199.1.A1_at	At1g15520	PDR-like ABC-transporter	-	4e-1	At2g44920	thylakoid lumenal 15 kDa protein, chloroplast	O.I.	H.G.	S.X.	Please select
0.50	71.7	GmaAffx.90300.1.S1_at	At1g15520	PDR-like ABC-transporter	-	2e-2	At1g15520	PDR12 (PLEIOTROPIC DRUG RESISTANCE 12)	O.I.	H.G.	S.X.	Please select
0.50	71.7	Gma.2526.3.S1_s_at	At1g15520	WRKY23 protein	-	8e-10	At4g04450	WRKY42	O.I.	H.G.	S.X.	Please select
0.50	71.7	Gma.2526.1.S1_x_at	At1g15520	WRKY23 (WRKY23)	-	6e-26	At1g62300	WRKY6	O.I.	H.G.	S.X.	Please select
0.50	71.7	Gma.2526.1.S1_at	At1g15520	WRKY23 (WRKY23)	-	6e-26	At1g62300	WRKY6	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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