CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig13965_at

Gene name
Homology with Arabidopsis Similar to At5g55056: unknown protein (HF=7e+0)

Module size 6 genes

NF 0.67

%ile 88.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 90.8 0.92 Contig13965_at Contig13965 - - 7e+0 At5g55056 unknown protein O.I. H.G. S.X.
0.67 84.7 0.93 HX07O15r_at HX07O15r - - 4e+0 At5g05470 EIF2 ALPHA O.I. H.G. S.X.
0.60 77.3 0.91 Contig26019_at Contig26019 - - 3e+0 At2g29650 PHT4 O.I. H.G. S.X.
0.60 77.3 0.92 Contig21865_at Contig21865 - - 9e-1 At5g45870 Bet v I allergen family protein O.I. H.G. S.X.
0.55 72.0 0.93 Contig14949_at Contig14949 - - 3e-2 At3g19100 calcium-dependent protein kinase, putative / CDPK, putative O.I. H.G. S.X.
0.46 61.0 0.93 Contig13428_at Contig13428 - - 6e-5 At3g17160 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.77	90.8	0.92	Contig13965_at	Contig13965	-	-	7e+0	At5g55056	unknown protein	O.I.	H.G.	S.X.
0.67	84.7	0.93	HX07O15r_at	HX07O15r	-	-	4e+0	At5g05470	EIF2 ALPHA	O.I.	H.G.	S.X.
0.60	77.3	0.91	Contig26019_at	Contig26019	-	-	3e+0	At2g29650	PHT4	O.I.	H.G.	S.X.
0.60	77.3	0.92	Contig21865_at	Contig21865	-	-	9e-1	At5g45870	Bet v I allergen family protein	O.I.	H.G.	S.X.
0.55	72.0	0.93	Contig14949_at	Contig14949	-	-	3e-2	At3g19100	calcium-dependent protein kinase, putative / CDPK, putative	O.I.	H.G.	S.X.
0.46	61.0	0.93	Contig13428_at	Contig13428	-	-	6e-5	At3g17160	unknown protein	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.73	88.7	0.90	Contig23185_at	Contig23185	-	-	3e-2	At3g26790	FUS3 (FUSCA 3)	O.I.	H.G.	S.X.
0.71	87.1	0.87	Contig11481_at	Contig11481	-	-	1e+0	At2g26670	TED4 (REVERSAL OF THE DET PHENOTYPE 4)	O.I.	H.G.	S.X.
0.67	84.7	0.80	Contig16294_at	Contig16294	-	-	9e-3	At1g56190	phosphoglycerate kinase, putative	O.I.	H.G.	S.X.
0.55	72.0	0.89	Contig15468_at	Contig15468	-	-	2e-4	At5g56140	KH domain-containing protein	O.I.	H.G.	S.X.
0.50	66.9	0.86	Contig24717_at	Contig24717	-	-	4e+0	At4g38570	PIS2 (PROBABLE CDP-DIACYLGLYCEROL--INOSITOL 3-PHOSPHATIDYLTRANSFERASE 2)	O.I.	H.G.	S.X.
0.40	53.1	0.85	Contig14186_at	Contig14186	-	-	2e+0	At5g51650	unknown protein	O.I.	H.G.	S.X.
0.40	53.1	0.93	Contig26369_at	Contig26369	-	-	4e+0	At4g02620	vacuolar ATPase subunit F family protein	O.I.	H.G.	S.X.
0.38	49.5	0.91	Contig14053_at	Contig14053	-	-	3e-1	At2g45760	BAP2 (BON ASSOCIATION PROTEIN 2)	O.I.	H.G.	S.X.
0.33	42.6	0.83	Contig13990_at	Contig13990	-	-	3e+0	At4g04745	unknown protein	O.I.	H.G.	S.X.
0.33	42.6	0.84	Contig25355_at	Contig25355	-	-	4e-17	At1g30890	integral membrane HRF1 family protein	O.I.	H.G.	S.X.
0.33	42.6	0.85	Contig5387_at	Contig5387	-	-	1e-3	At5g02530	RNA and export factor-binding protein, putative	O.I.	H.G.	S.X.
0.33	42.6	0.86	HW08A17u_at	HW08A17u	-	-	4e+0	At1g32540	LOL1 (LSD ONE LIKE 1)	O.I.	H.G.	S.X.
0.32	40.3	0.87	Contig10000_at	Contig10000	-	-	8e+0	At5g05113	unknown protein	O.I.	H.G.	S.X.
0.31	38.6	0.89	HS16J10u_at	HS16J10u	-	-	6e-2	At4g21450	vesicle-associated membrane family protein / VAMP family protein	O.I.	H.G.	S.X.
0.31	38.6	0.89	HB22L02r_at	HB22L02r	-	-	1e+0	At1g44770	unknown protein	O.I.	H.G.	S.X.
0.31	38.6	0.90	Contig13884_at	Contig13884	-	-	3e-5	At2g37510	RNA-binding protein, putative	O.I.	H.G.	S.X.
0.30	37.0	0.84	Contig25212_at	Contig25212	-	-	1e+0	At1g08470	strictosidine synthase family protein	O.I.	H.G.	S.X.
0.29	35.5	0.90	HVSMEg0010O10r2_s_at	HVSMEg0010O10r2	-	-	8e-1	At1g28815	unknown protein	O.I.	H.G.	S.X.
0.29	35.5	0.91	Contig7087_at	Contig7087	-	-	8e-1	At3g27160	GHS1 (GLUCOSE HYPERSENSITIVE 1)	O.I.	H.G.	S.X.
0.28	35.5	0.77	Contig16500_at	Contig16500	-	-	5e+0	At5g23395	-	O.I.	H.G.	S.X.
0.28	35.5	0.89	Contig11177_at	Contig11177	-	-	5e-1	At5g53730	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	O.I.	H.G.	S.X.
0.27	32.1	0.91	Contig13768_at	Contig13768	-	-	8e-3	At5g03030	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.
0.27	32.1	0.93	Contig12506_at	Contig12506	-	-	2e+0	At4g31740	-	O.I.	H.G.	S.X.
0.25	28.9	0.82	rbah58n17_s_at	rbah58n17	-	-	1e+0	At1g77855	unknown protein	O.I.	H.G.	S.X.
0.25	28.9	0.89	Contig7603_at	Contig7603	-	-	4e-21	At2g29390	SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2)	O.I.	H.G.	S.X.
0.25	28.9	0.89	Contig20937_at	Contig20937	-	-	1e+0	At5g04510	PDK1 (3'-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.3 98.5 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
7.2 98.5 GSM238433 Embryo 0 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
6.5 98.2 GSM238434 Embryo 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.6 97.7 GSM238429 Embryo 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
4.9 97.1 GSM146379 Maythorpe shoot Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.7 96.9 GSM238435 Embryo 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
4.2 96.3 GSM440960 Stressed lemma_Rep1 GSE17669 Gene expression in the barley spike during drought stress
4.2 96.3 GSM238430 Embryo 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.1 96.2 GSM238432 Embryo 0 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.9 95.8 GSM238409 Pericarp 4DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
7.3	98.5	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.2	98.5	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.5	98.2	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.6	97.7	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.9	97.1	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.7	96.9	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.2	96.3	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	Contig13965_at
Gene name
Homology with Arabidopsis	Similar to At5g55056: unknown protein (HF=7e+0)
Module size	6 genes
NF	0.67
%ile	88.8

Co-expression analysis

Gene ID Contig13965_at Gene name Homology with ArabidopsisSimilar to At5g55056: unknown protein (HF=7e+0) Module size 6 genes NF 0.67 %ile 88.8

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Contig13965_at

Gene name
Homology with Arabidopsis Similar to At5g55056: unknown protein (HF=7e+0)

Module size 6 genes

NF 0.67

%ile 88.8

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays