Co-expression analysis

Gene ID	Contig13965_at
Gene name
Homology with Arabidopsis	Similar to At5g55056: unknown protein (HF=7e+0)
Module size	6 genes
NF	0.67
%ile	88.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	0.92	Contig13965_at	Contig13965	-	-	7e+0	At5g55056	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.93	HX07O15r_at	HX07O15r	-	-	4e+0	At5g05470	EIF2 ALPHA	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.91	Contig26019_at	Contig26019	-	-	3e+0	At2g29650	PHT4	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.92	Contig21865_at	Contig21865	-	-	9e-1	At5g45870	Bet v I allergen family protein	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.93	Contig14949_at	Contig14949	-	-	3e-2	At3g19100	calcium-dependent protein kinase, putative / CDPK, putative	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.93	Contig13428_at	Contig13428	-	-	6e-5	At3g17160	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.3	98.5	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.2	98.5	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.5	98.2	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.6	97.7	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.9	97.1	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.7	96.9	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.2	96.3	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.65711.1.S1_at, orthologous to the query gene, Contig13965_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	81.8	GmaAffx.65711.1.S1_at	At5g55056	-	-	3e-1	At5g16760	inositol 1,3,4-trisphosphate 5/6-kinase	O.I.	H.G.	S.X.	Please select
0.80	91.5	GmaAffx.21078.1.A1_at	At5g55056	-	-	3e+0	At1g56385	-	O.I.	H.G.	S.X.	Please select
0.33	46.1	GmaAffx.68076.1.S1_at	At5g55056	-	-	6e-6	At5g04060	dehydration-responsive protein-related	O.I.	H.G.	S.X.	Please select
0.31	42.2	Gma.16966.1.A1_at	At5g55056	-	-	1e+0	At5g42560	abscisic acid-responsive HVA22 family protein	O.I.	H.G.	S.X.	Please select
0.27	35.7	GmaAffx.24373.1.A1_at	At5g55056	-	-	3e-1	At5g25752	RBL11 (RHOMBOID-LIKE PROTEIN 11)	O.I.	H.G.	S.X.	Please select
0.21	26.6	Gma.5683.2.S1_at	At5g55056	-	-	7e-75	At1g11840	ATGLX1 (GLYOXALASE I HOMOLOG)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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