Co-expression analysis

Gene ID	Contig13943_s_at
Gene name
Homology with Arabidopsis	Similar to At4g00880: auxin-responsive family protein (HF=4e+0)
Module size	6 genes
NF	0.64
%ile	85.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	66.9	0.96	Contig13943_s_at	Contig13943	-	-	4e+0	At4g00880	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.97	HVSMEf0015C12f_at	HVSMEf0015C12f	-	-	3e+0	At3g26060	ATPRX Q	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.97	Contig13141_at	Contig13141	-	-	1e-5	At4g25770	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.98	ChlorContig14_at	ChlorContig14	-	-	4e-157	Atcg00280	-	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.96	Contig16735_at	Contig16735	-	-	6e+0	At5g42053	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.97	Contig22083_at	Contig22083	-	-	2e+0	At5g65480	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.7	99.4	GSM261053	Bonus Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
11.0	99.2	GSM261056	Xantha b-12 Cotrol rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
10.5	99.2	GSM261054	Bonus Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
10.2	99.1	GSM261055	Bonus Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.5	98.8	GSM261060	Xantha b-12 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.1	98.0	GSM261057	Xantha b-12 Cotrol rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.2	96.3	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.2	96.3	GSM261038	Dicktoo-subzero-rep3	GSE10329	Low temperature stress in cv. Dicktoo
4.0	96.0	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.0	96.0	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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