Co-expression analysis

Gene ID	Contig1393_at
Gene name
Homology with Arabidopsis	Similar to At3g46520: ACT12 (ACTIN-12) (HF=1e-42)
Module size	18 genes
NF	0.48
%ile	66.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.92	Contig1393_at	Contig1393	-	-	1e-42	At3g46520	ACT12 (ACTIN-12)	O.I.	H.G.	S.X.	Please select
0.65	81.4	0.93	Contig19698_at	Contig19698	-	-	6e-3	At2g33030	AtRLP25 (Receptor Like Protein 25)	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.93	Contig2053_at	Contig2053	-	-	5e+0	At2g38880	NF-YB1 (NUCLEAR FACTOR Y, SUBUNIT B1)	O.I.	H.G.	S.X.	Please select
0.62	79.1	0.93	rbags1d23_s_at	rbags1d23	-	-	1e+1	At5g50000	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.94	Contig12867_at	Contig12867	-	-	9e-41	At1g34430	EMB3003 (embryo defective 3003)	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.94	Contig4672_at	Contig4672	-	-	4e-71	At5g10840	endomembrane protein 70, putative	O.I.	H.G.	S.X.	Please select
0.54	70.3	0.92	HF13G03r_at	HF13G03r	-	-	4e+0	At2g30020	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.49	63.7	0.94	Contig7556_s_at	Contig7556	-	-	5e-1	At1g21326	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.94	HVSMEi0017F16r2_x_at	HVSMEi0017F16r2	-	-	2e+0	At2g33620	DNA-binding family protein / AT-hook protein 1 (AHP1)	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.93	Contig7205_at	Contig7205	-	-	2e-2	At2g32550	rcd1-like cell differentiation family protein	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.95	Contig3332_at	Contig3332	-	-	2e-1	At3g21215	RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.93	Contig3335_at	Contig3335	-	-	3e-67	At5g59840	Ras-related GTP-binding family protein	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.94	Contig3334_at	Contig3334	-	-	2e-53	At3g53610	ATRAB8	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.94	Contig10899_at	Contig10899	-	-	3e+0	At3g63530	BB (BIG BROTHER)	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.94	Contig1302_at	Contig1302	-	-	1e-5	At1g20580	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.93	Contig16313_at	Contig16313	-	-	1e-1	At1g35170	-	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.94	Contig3337_at	Contig3337	-	-	5e-50	At5g59840	Ras-related GTP-binding family protein	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.94	Contig6956_at	Contig6956	-	-	2e-1	At2g33410	heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.1	99.5	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.7	96.9	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.7	96.9	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.5	96.7	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
4.2	96.3	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM440979	Stressed seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.0	96.0	GSM419981	Seed_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.0	96.0	GSM440975	Control seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.0	96.0	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.8	95.7	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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