Co-expression analysis

Gene ID Contig1391_at
Gene name
Homology with ArabidopsisSimilar to At5g09810: ACT7 (ACTIN 7) (HF=0)
Module size 6 genes
NF 0.04
%ile 5.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.81Contig1391_atContig1391--0At5g09810ACT7 (ACTIN 7)O.I.H.G.S.X.
0.4356.40.90HVSMEk0019C04r2_atHVSMEk0019C04r2--1e+1At5g15725unknown proteinO.I.H.G.S.X.
0.086.50.82Contig6576_s_atContig6576--6e-6At3g04720PR4 (PATHOGENESIS-RELATED 4)O.I.H.G.S.X.
0.043.40.93Contig10535_atContig10535--1e-4At3g14080small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putativeO.I.H.G.S.X.
0.021.80.93Contig19167_s_atContig19167--1e+1At5g55550RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.011.10.93Contig10661_atContig10661--2e+0At3g15680zinc finger (Ran-binding) family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.499.0GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.098.7GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.298.0GSM311265kara_without_aphids_3GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines Link to GEO
3.194.1GSM261073Albina f-17 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.093.8GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.093.8GSM311261kara_with_aphids_3GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines Link to GEO
3.093.8GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.993.4GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.893.1GSM261067Xantha s-46 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.893.1GSM311259kara_with_aphids_1GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines Link to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.16513.9.A1_a_at, orthologous to the query gene, Contig1391_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9399.3Zm.16513.9.A1_a_atAt5g09810--0At5g09810ACT7 (ACTIN 7)O.I.H.G.S.X.
0.5369.1Zm.7121.2.A1_x_atAt5g09810--5e-6At3g12120FAD2 (FATTY ACID DESATURASE 2)O.I.H.G.S.X.
0.4455.7Zm.6244.2.S1_atAt5g09810--8e-1At2g43350ATGPX3 (GLUTATHIONE PEROXIDASE 3)O.I.H.G.S.X.
0.4455.7Zm.1662.1.A1_a_atAt5g09810--6e-1At5g35570unknown proteinO.I.H.G.S.X.
0.4048.5Zm.7122.1.A1_atAt5g09810--2e+0At1g35580CINV1 (cytosolic invertase 1)O.I.H.G.S.X.
0.3945.6Zm.16834.1.A1_atAt5g09810--4e-1At1g64370unknown proteinO.I.H.G.S.X.
0.3945.6Zm.6787.1.A1_a_atAt5g09810hypothetical protein LOC100274407 /// UMP synthase-2e-17At3g54470uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS)O.I.H.G.S.X.
0.3844.2Zm.15891.1.S1_atAt5g09810--1e-14At5g2390060S ribosomal protein L13 (RPL13D)O.I.H.G.S.X.
0.3437.2Zm.4409.1.A1_atAt5g09810hypothetical protein LOC100194336-8e+0At3g58100PDCB5 (PLASMODESMATA CALLOSE-BINDING PROTEIN 5)O.I.H.G.S.X.
0.3437.2Zm.17310.1.A1_atAt5g09810--7e+0At5g42000ORMDL family proteinO.I.H.G.S.X.
0.3437.2Zm.6785.1.A1_a_atAt5g09810S-adenosylmethionine decarboxylase proenzyme-3e-1At3g02468CPuORF9 (Conserved peptide upstream open reading frame 9)O.I.H.G.S.X.
0.3029.8Zm.14476.1.A1_a_atAt5g09810protein disulfide isomerase /// protein disulfide isomerase-1e-3At5g60640ATPDIL1-4 (PDI-LIKE 1-4)O.I.H.G.S.X.
0.3029.8Zm.4078.1.A1_atAt5g09810protein kinase APK1A-6e-16At3g01300protein kinase, putativeO.I.H.G.S.X.
0.2828.1Zm.2979.1.S1_atAt5g09810trafficking protein particle complex protein 2-2e-12At1g80500-O.I.H.G.S.X.
0.2216.9Zm.7176.1.A1_atAt5g09810--5e+0At5g05210nucleolar matrix protein-relatedO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



Back to the CoP portal site

Back to the KAGIANA project homepage