CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig1391_at

Gene name
Homology with Arabidopsis Similar to At5g09810: ACT7 (ACTIN 7) (HF=0)

Module size 6 genes

NF 0.04

%ile 5.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.81 Contig1391_at Contig1391 - - 0 At5g09810 ACT7 (ACTIN 7) O.I. H.G. S.X.
0.43 56.4 0.90 HVSMEk0019C04r2_at HVSMEk0019C04r2 - - 1e+1 At5g15725 unknown protein O.I. H.G. S.X.
0.08 6.5 0.82 Contig6576_s_at Contig6576 - - 6e-6 At3g04720 PR4 (PATHOGENESIS-RELATED 4) O.I. H.G. S.X.
0.04 3.4 0.93 Contig10535_at Contig10535 - - 1e-4 At3g14080 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative O.I. H.G. S.X.
0.02 1.8 0.93 Contig19167_s_at Contig19167 - - 1e+1 At5g55550 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.01 1.1 0.93 Contig10661_at Contig10661 - - 2e+0 At3g15680 zinc finger (Ran-binding) family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.4 99.0 GSM238429 Embryo 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
8.0 98.7 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
6.2 98.0 GSM311265 kara_without_aphids_3 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
3.1 94.1 GSM261073 Albina f-17 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.0 93.8 GSM238408 Pericarp 4DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.0 93.8 GSM311261 kara_with_aphids_3 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
3.0 93.8 GSM261070 Albina f-17 Control rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.9 93.4 GSM238430 Embryo 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
2.8 93.1 GSM261067 Xantha s-46 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.8 93.1 GSM311259 kara_with_aphids_1 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines

Inter-species module comparison

A co-expression module including the rice gene, Os10g0510000, orthologous to the query gene, Contig1391_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 Os10g0510000 At5g09810 - Actin 7 (Actin 2) 0 At3g12110 ACT11 (actin-11) O.I. H.G. S.X.
0.74 91.4 Os03g0647800 At5g09810 - Conserved hypothetical protein 2e-4 At3g44150 unknown protein O.I. H.G. S.X.
0.53 71.3 Os03g0117300 At5g09810 - Beta-glucanase family protein 1e-1 At2g32890 RALFL17 (RALF-LIKE 17) O.I. H.G. S.X.
0.53 71.3 Os03g0356700 At5g09810 - Villin 3 4e-38 At2g41740 VLN2 (VILLIN 2) O.I. H.G. S.X.
0.50 68.0 Os02g0817500 At5g09810 - KCNAB voltage-gated K+ channel, beta subunitfamily protein 1e-2 At1g04690 KAB1 (POTASSIUM CHANNEL BETA SUBUNIT) O.I. H.G. S.X.
0.43 55.4 Os03g0292800 At5g09810 - Ran binding protein 1 homolog 4e-11 At5g58590 RANBP1 (RAN BINDING PROTEIN 1) O.I. H.G. S.X.
0.30 32.7 Os07g0655400 At5g09810 - Conserved hypothetical protein 8e-1 At3g07950 rhomboid protein-related O.I. H.G. S.X.
0.25 24.1 Os02g0317400 At5g09810 - Clathrin adaptor complex, small chain familyprotein 5e-4 At4g08520 clathrin adaptor complex small chain family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage