Co-expression analysis

Gene ID Contig1391_at
Gene name
Homology with ArabidopsisSimilar to At5g09810: ACT7 (ACTIN 7) (HF=0)
Module size 6 genes
NF 0.04
%ile 5.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.81Contig1391_atContig1391--0At5g09810ACT7 (ACTIN 7)O.I.H.G.S.X.
0.4356.40.90HVSMEk0019C04r2_atHVSMEk0019C04r2--1e+1At5g15725unknown proteinO.I.H.G.S.X.
0.086.50.82Contig6576_s_atContig6576--6e-6At3g04720PR4 (PATHOGENESIS-RELATED 4)O.I.H.G.S.X.
0.043.40.93Contig10535_atContig10535--1e-4At3g14080small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putativeO.I.H.G.S.X.
0.021.80.93Contig19167_s_atContig19167--1e+1At5g55550RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.011.10.93Contig10661_atContig10661--2e+0At3g15680zinc finger (Ran-binding) family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.499.0GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.098.7GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.298.0GSM311265kara_without_aphids_3GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines Link to GEO
3.194.1GSM261073Albina f-17 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.093.8GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.093.8GSM311261kara_with_aphids_3GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines Link to GEO
3.093.8GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.993.4GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.893.1GSM261067Xantha s-46 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.893.1GSM311259kara_with_aphids_1GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines Link to GEO

Inter-species module comparison

A co-expression module including the soybean gene, Gma.6406.1.S1_at, orthologous to the query gene, Contig1391_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7790.3Gma.6406.1.S1_atAt5g09810--0At2g37620ACT1 (ACTIN 1)O.I.H.G.S.X.
0.1721.2Gma.15483.2.S1_a_atAt5g09810--2e-8At1g23190phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putativeO.I.H.G.S.X.
0.1619.7Gma.17625.1.S1_a_atAt5g09810--6e-55At4g14960TUA6O.I.H.G.S.X.
0.1619.7Gma.6257.2.S1_a_atAt5g09810--2e-12At3g03250UGP (UDP-glucose pyrophosphorylase)O.I.H.G.S.X.
0.1619.7Gma.11254.1.S1_a_atAt5g09810--9e+0At5g45040cytochrome c6 (ATC6)O.I.H.G.S.X.
0.013.4Gma.2203.1.A1_s_atAt5g09810--6e-15At1g64880ribosomal protein S5 family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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