Co-expression analysis

Gene ID	Contig1390_5_at
Gene name
Homology with Arabidopsis	Similar to At5g09810: ACT7 (ACTIN 7) (HF=0)
Module size	8 genes
NF	0.17
%ile	21.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.3	0.86	Contig1390_5_at	Contig1390_5	-	-	0	At5g09810	ACT7 (ACTIN 7)	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.87	HV_CEb0002I14r2_at	HV_CEb0002I14r2	-	-	4e+0	At4g01940	NFU1	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.89	Contig13912_at	Contig13912	-	-	2e+0	At3g05810	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.87	Contig13773_at	Contig13773	-	-	5e+0	At5g24352	-	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.89	Contig14660_at	Contig14660	-	-	5e-1	At4g28830	methyltransferase/ nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.87	Contig24571_at	Contig24571	-	-	2e+0	At2g40600	appr-1-p processing enzyme family protein	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.89	Contig969_at	Contig969	-	-	1e-72	At1g70490	ARFA1D	O.I.	H.G.	S.X.	Please select
0.09	7.4	0.88	Contig6086_at	Contig6086	-	-	4e-11	At1g32220	binding / catalytic/ coenzyme binding	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.4	99.2	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.4	98.5	GSM71156	Morex stress and unstress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
6.0	97.9	GSM71140	OWB-D stress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
5.4	97.5	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.4	97.5	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
4.7	96.9	GSM372945	genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.6	96.8	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.5	96.7	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.7	95.5	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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