Co-expression analysis

Gene ID	Contig1390_3_s_at
Gene name	actin
Homology with Arabidopsis	Similar to At5g09810: ACT7 (ACTIN 7) (HF=0)
Module size	10 genes
NF	0.64
%ile	85.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.62	79.1	0.86	Contig1390_3_s_at	Contig1390_3	actin	-	0	At5g09810	ACT7 (ACTIN 7)	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.93	Contig6587_s_at	Contig6587	-	-	1e-4	At3g52470	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.91	rbags16i08_s_at	rbags16i08	-	-	8e-1	At4g21330	DYT1 (DYSFUNCTIONAL TAPETUM 1)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.92	Contig14353_at	Contig14353	-	-	9e-3	At1g49950	DNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.92	Contig2750_s_at	Contig2750	-	-	4e-15	At2g33150	PKT3 (PEROXISOMAL 3-KETOACYL-COA THIOLASE 3)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.93	Contig2748_at	Contig2748	-	-	1e-2	At4g20130	PTAC14 (PLASTID TRANSCRIPTIONALLY ACTIVE14)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.93	Contig24888_at	Contig24888	-	-	1e+0	At2g26940	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.91	Contig26180_at	Contig26180	-	-	4e+0	At5g05690	CPD (CONSTITUTIVE PHOTOMORPHOGENIC DWARF)	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.92	Contig67_at	Contig67	-	-	4e-40	At2g37600	60S ribosomal protein L36 (RPL36A)	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.93	HVSMEh0086G04r2_at	HVSMEh0086G04r2	-	-	3e+0	At4g03280	PETC (PHOTOSYNTHETIC ELECTRON TRANSFER C)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.9	97.1	GSM372954	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.7	96.9	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.6	96.8	GSM372952	genotype: Mla6 - pathogen isolates: 5874 - time: 24 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.6	96.8	GSM372951	genotype: Mla6 - pathogen isolates: 5874 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.0	96.0	GSM372949	genotype: Mla6 - pathogen isolates: 5874 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.5	95.1	GSM71156	Morex stress and unstress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
3.3	94.6	GSM71153	Barke stress and unstress replicate 4	GSE3170	Barley single feature polymorphisms and drought stress gene expression
3.2	94.3	GSM160822	38% SWC rep3	GSE6990	Barley drought stress
3.1	94.1	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM160823	19% SWC rep1	GSE6990	Barley drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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