Co-expression analysis

Gene ID Contig13884_at
Gene name
Homology with ArabidopsisSimilar to At2g37510: RNA-binding protein, putative (HF=3e-5)
Module size 8 genes
NF 0.52
%ile 72.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5066.90.90Contig13884_atContig13884--3e-5At2g37510RNA-binding protein, putativeO.I.H.G.S.X.
0.5572.00.93Contig11177_atContig11177--5e-1At5g53730harpin-induced family protein / HIN1 family protein / harpin-responsive family proteinO.I.H.G.S.X.
0.5369.70.91Contig26369_atContig26369--4e+0At4g02620vacuolar ATPase subunit F family proteinO.I.H.G.S.X.
0.5369.70.91Contig21865_atContig21865--9e-1At5g45870Bet v I allergen family proteinO.I.H.G.S.X.
0.5066.90.93Contig13428_atContig13428--6e-5At3g17160unknown proteinO.I.H.G.S.X.
0.5066.90.94Contig14949_atContig14949--3e-2At3g19100calcium-dependent protein kinase, putative / CDPK, putativeO.I.H.G.S.X.
0.4053.10.92Contig13965_atContig13965--7e+0At5g55056unknown proteinO.I.H.G.S.X.
0.3342.60.92Contig4910_atContig4910--3e+0At5g09280pectate lyase family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.398.8GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.698.6GSM238417Endosperm 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.698.6GSM238418Endosperm 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.398.1GSM238416Endosperm 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.997.9GSM238419Endosperm 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.497.5GSM238433Embryo 0 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.497.5GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.897.0GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.496.6GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.695.3GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage