Co-expression analysis

Gene ID Contig13834_at
Gene name
Homology with ArabidopsisSimilar to At5g04660: CYP77A4 (HF=1e-1)
Module size 6 genes
NF 0.50
%ile 70.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6380.30.95Contig13834_atContig13834--1e-1At5g04660CYP77A4O.I.H.G.S.X.
0.8394.00.94HV_CEa0013O16r2_atHV_CEa0013O16r2--3e-2At2g34980SETH1O.I.H.G.S.X.
0.8092.50.94Contig1947_atContig1947--2e-5At5g13510ribosomal protein L10 family proteinO.I.H.G.S.X.
0.4356.40.95Contig5440_atContig5440--6e-4At4g28280unknown proteinO.I.H.G.S.X.
0.4053.10.95Contig14634_atContig14634--8e-1At5g26790unknown proteinO.I.H.G.S.X.
0.1919.60.94Contig19439_atContig19439--1e-4At2g02040PTR2 (PEPTIDE TRANSPORTER 2)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.497.5GSM146373Golden Promise shoot Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
5.497.5GSM146379Maythorpe shoot Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
4.596.7GSM382233Root_Hg2GSE15295Mercury toxicity in barley rootsLink to GEO
4.596.7GSM382232Root_Hg1GSE15295Mercury toxicity in barley rootsLink to GEO
4.396.4GSM161200cold treatment rep1GSE6993Barley low temperature stressLink to GEO
4.296.3GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
3.995.8GSM382236Root_Control2GSE15295Mercury toxicity in barley rootsLink to GEO
3.895.7GSM160744drought control rep2GSE6990Barley drought stressLink to GEO
3.895.7GSM261032Dicktoo control-rep3GSE10329Low temperature stress in cv. DicktooLink to GEO
3.795.5GSM160815drought control rep3GSE6990Barley drought stressLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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