Co-expression analysis

Gene ID	Contig1382_at
Gene name
Homology with Arabidopsis	Similar to At2g29960: CYP5 (CYCLOPHILIN 5) (HF=5e-50)
Module size	6 genes
NF	0.31
%ile	40.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	58.9	0.94	Contig1382_at	Contig1382	-	-	5e-50	At2g29960	CYP5 (CYCLOPHILIN 5)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.95	Contig647_at	Contig647	-	-	3e-17	At4g29390	40S ribosomal protein S30 (RPS30B)	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.95	S0000800185F05F1_s_at	S0000800185F05F1	-	-	3e-7	At1g78870	UBC35 (UBIQUITIN-CONJUGATING ENZYME 35)	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.95	Contig18972_at	Contig18972	-	-	4e+0	At3g05165	sugar transporter, putative	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.94	Contig4566_at	Contig4566	-	-	3e+0	At4g32870	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.95	Contig3798_at	Contig3798	-	-	1e-30	At2g40290	eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.7	97.7	GSM311249	28-4_without_aphids_1	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
4.8	97.0	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.4	96.6	GSM146371	Golden Promise shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.3	96.4	GSM311255	hsp5_with_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
4.2	96.3	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.2	96.3	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.5	95.1	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.3	94.6	GSM398263	HS41-1_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.3	94.6	GSM311253	hsp5_with_aphids_1	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
3.2	94.3	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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