Co-expression analysis

Gene ID Contig1382_at
Gene name
Homology with ArabidopsisSimilar to At2g29960: CYP5 (CYCLOPHILIN 5) (HF=5e-50)
Module size 6 genes
NF 0.31
%ile 40.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4458.90.94Contig1382_atContig1382--5e-50At2g29960CYP5 (CYCLOPHILIN 5)O.I.H.G.S.X.
0.3342.60.95Contig647_atContig647--3e-17At4g2939040S ribosomal protein S30 (RPS30B)O.I.H.G.S.X.
0.3037.00.95S0000800185F05F1_s_atS0000800185F05F1--3e-7At1g78870UBC35 (UBIQUITIN-CONJUGATING ENZYME 35)O.I.H.G.S.X.
0.2732.10.95Contig18972_atContig18972--4e+0At3g05165sugar transporter, putativeO.I.H.G.S.X.
0.2630.40.94Contig4566_atContig4566--3e+0At4g32870unknown proteinO.I.H.G.S.X.
0.1818.20.95Contig3798_atContig3798--1e-30At2g40290eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putativeO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.797.7GSM31124928-4_without_aphids_1GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines Link to GEO
4.897.0GSM146379Maythorpe shoot Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
4.496.6GSM146371Golden Promise shoot Control, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
4.396.4GSM311255hsp5_with_aphids_3GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines Link to GEO
4.296.3GSM419983Seed_Rep3GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
4.296.3GSM440977Control seed_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.595.1GSM146373Golden Promise shoot Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.394.6GSM398263HS41-1_0d_rep3GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
3.394.6GSM311253hsp5_with_aphids_1GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines Link to GEO
3.294.3GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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