Co-expression analysis

Gene ID Contig13805_at
Gene name
Homology with ArabidopsisSimilar to At2g40080: ELF4 (EARLY FLOWERING 4) (HF=5e-1)
Module size 6 genes
NF 0.56
%ile 78.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5572.00.95Contig13805_atContig13805--5e-1At2g40080ELF4 (EARLY FLOWERING 4)O.I.H.G.S.X.
0.7388.70.95Contig20488_atContig20488--3e-1At1g30540ATPase, BadF/BadG/BcrA/BcrD-type familyO.I.H.G.S.X.
0.5975.80.94Contig15003_atContig15003--5e-1At4g37608unknown proteinO.I.H.G.S.X.
0.5066.90.95Contig22235_atContig22235--2e+1At5g15560unknown proteinO.I.H.G.S.X.
0.4053.10.96Contig26418_atContig26418--2e+0At4g32260ATP synthase familyO.I.H.G.S.X.
0.3342.60.95Contig20907_atContig20907--2e+0At4g18425unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
24.599.8GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
22.999.8GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
10.499.2GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.798.6GSM261068Albina f-17 Control rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
5.697.7GSM261069Albina f-17 Control rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.396.4GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.296.3GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.494.8GSM6890427 h salt stressed replicate 1GSE3097Barley1 salinity stress studyLink to GEO
3.394.6GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.093.8GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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