Co-expression analysis

Gene ID Contig13784_at
Gene name
Homology with ArabidopsisSimilar to At2g03610: F-box family protein (HF=4e-1)
Module size 6 genes
NF 0.68
%ile 89.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.93Contig13784_atContig13784--4e-1At2g03610F-box family proteinO.I.H.G.S.X.
0.7790.80.92Contig6395_atContig6395--7e+0At5g23750remorin family proteinO.I.H.G.S.X.
0.6784.70.93Contig15545_atContig15545--5e-1At1g13740AFP2 (ABI FIVE BINDING PROTEIN 2)O.I.H.G.S.X.
0.6784.70.95HVSMEg0015E17r2_atHVSMEg0015E17r2--8e-1At2g25120bromo-adjacent homology (BAH) domain-containing proteinO.I.H.G.S.X.
0.6077.30.93HVSMEi0007G06r2_s_atHVSMEi0007G06r2--1e+1At4g09830-O.I.H.G.S.X.
0.2528.90.93Contig14611_atContig14611--6e-13At4g15510photosystem II reaction center PsbP family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.796.9GSM261073Albina f-17 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.995.8GSM382237Root_Control3GSE15295Mercury toxicity in barley rootsLink to GEO
3.895.7GSM282022Malting_day4_Merit_rep4GSE11200Expression data from malting barley seedsLink to GEO
3.595.1GSM146357Golden Promise Root Control, biological rep1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.494.8GSM282033Malting_day4_Harrington_rep4GSE11200Expression data from malting barley seedsLink to GEO
3.394.6GSM146366Maythorpe Root Salt, biological rep 1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.394.6GSM146360Golden Promise Root Salt, biological rep 1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.294.3GSM146363Maythorpe Root Control, biological rep1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.993.4GSM382232Root_Hg1GSE15295Mercury toxicity in barley rootsLink to GEO
2.893.1GSM146368Maythorpe Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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