Co-expression analysis

Gene ID	Contig13783_at
Gene name
Homology with Arabidopsis	Similar to At2g41225: unknown protein (HF=4e-1)
Module size	6 genes
NF	0.59
%ile	81.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.96	Contig13783_at	Contig13783	-	-	4e-1	At2g41225	unknown protein	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.96	Contig1056_s_at	Contig1056	-	-	5e-140	At4g05050	UBQ11 (UBIQUITIN 11)	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.96	Contig14599_at	Contig14599	-	-	3e-2	At3g17160	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.97	Contig12434_at	Contig12434	-	-	2e-6	At4g30930	NFD1 (NUCLEAR FUSION DEFECTIVE 1)	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.96	Contig13988_at	Contig13988	-	-	5e-4	At4g24020	NLP7 (NIN LIKE PROTEIN 7)	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.96	Contig6981_at	Contig6981	-	-	4e-5	At4g00170	vesicle-associated membrane family protein / VAMP family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.8	98.9	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
8.7	98.9	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
6.9	98.3	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.5	97.6	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.8	97.0	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.7	96.9	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.3	96.4	GSM130800	control, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
4.1	96.2	GSM146369	Golden Promise shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.1	96.2	GSM146375	Maythorpe shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

A co-expression module including the grape gene, 1611444_at, orthologous to the query gene, Contig13783_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.82	93.9	1611444_at	At2g41225	-	-	2e-1	At2g40310	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	O.I.	H.G.	S.X.	Please select
0.43	61.5	1621364_s_at	At2g41225	hypothetical protein LOC100252604	-	2e-12	At2g24940	AtMAPR2 (Arabidopsis thaliana membrane-associated progesterone binding protein 2)	O.I.	H.G.	S.X.	Please select
0.40	57.7	1618651_at	At2g41225	hypothetical protein LOC100241531	-	5e-13	At5g52960	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	1620421_at	At2g41225	hypothetical protein LOC100255218	-	4e-31	At1g50480	THFS (10-FORMYLTETRAHYDROFOLATE SYNTHETASE)	O.I.	H.G.	S.X.	Please select
0.27	34.0	1606673_at	At2g41225	hypothetical protein LOC100253524	-	1e-13	At3g10620	ATNUDX26 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 26)	O.I.	H.G.	S.X.	Please select
0.27	34.0	1611610_at	At2g41225	hypothetical protein LOC100246037	-	8e-22	At3g17240	mtLPD2 (LIPOAMIDE DEHYDROGENASE 2)	O.I.	H.G.	S.X.	Please select
0.06	6.8	1607084_at	At2g41225	-	-	3e-7	At1g06515	unknown protein	O.I.	H.G.	S.X.	Please select
0.06	6.8	1615231_at	At2g41225	hypothetical protein LOC100254995	-	1e-19	At2g31680	AtRABA5d (Arabidopsis Rab GTPase homolog A5d)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage