CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig13783_at

Gene name
Homology with Arabidopsis Similar to At2g41225: unknown protein (HF=4e-1)

Module size 6 genes

NF 0.59

%ile 81.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.96 Contig13783_at Contig13783 - - 4e-1 At2g41225 unknown protein O.I. H.G. S.X.
0.80 92.5 0.96 Contig1056_s_at Contig1056 - - 5e-140 At4g05050 UBQ11 (UBIQUITIN 11) O.I. H.G. S.X.
0.63 80.3 0.96 Contig14599_at Contig14599 - - 3e-2 At3g17160 unknown protein O.I. H.G. S.X.
0.50 66.9 0.97 Contig12434_at Contig12434 - - 2e-6 At4g30930 NFD1 (NUCLEAR FUSION DEFECTIVE 1) O.I. H.G. S.X.
0.47 62.2 0.96 Contig13988_at Contig13988 - - 5e-4 At4g24020 NLP7 (NIN LIKE PROTEIN 7) O.I. H.G. S.X.
0.22 24.2 0.96 Contig6981_at Contig6981 - - 4e-5 At4g00170 vesicle-associated membrane family protein / VAMP family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.8 98.9 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
8.7 98.9 GSM215732 gibberellin plus Yariv-reagent treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
6.9 98.3 GSM261046 after 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.5 97.6 GSM215729 gibberellin plus Yariv-reagent treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
4.8 97.0 GSM146377 Maythorpe shoot Control, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.7 96.9 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.5 96.7 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.3 96.4 GSM130800 control, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
4.1 96.2 GSM146369 Golden Promise shoot Control, biological rep1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.1 96.2 GSM146375 Maythorpe shoot Control, biological rep1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

A co-expression module including the wheat gene, Ta.16709.1.S1_at, orthologous to the query gene, Contig13783_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 82.0 Ta.16709.1.S1_at At2g41225 - - 4e-1 At4g11870 unknown protein O.I. H.G. S.X.
0.88 94.4 Ta.13153.1.S1_at At2g41225 - - 1e+0 At5g05060 - O.I. H.G. S.X.
0.80 92.2 Ta.20756.1.S1_x_at At2g41225 - - 6e+0 At5g64650 ribosomal protein L17 family protein O.I. H.G. S.X.
0.80 92.2 Ta.1807.1.S1_x_at At2g41225 - - 6e+0 At5g36925 unknown protein O.I. H.G. S.X.
0.79 91.3 Ta.20756.1.S1_at At2g41225 - - 6e+0 At5g64650 ribosomal protein L17 family protein O.I. H.G. S.X.
0.79 91.3 Ta.8788.1.A1_at At2g41225 - - 9e+0 At5g44060 unknown protein O.I. H.G. S.X.
0.78 91.1 Ta.8788.1.A1_a_at At2g41225 - - 9e+0 At5g44060 unknown protein O.I. H.G. S.X.
0.78 91.1 TaAffx.51582.1.S1_s_at At2g41225 - - 2e-1 At5g53970 aminotransferase, putative O.I. H.G. S.X.
0.77 90.8 Ta.18965.1.S1_at At2g41225 - - 1e-1 At1g22480 plastocyanin-like domain-containing protein O.I. H.G. S.X.
0.77 90.8 Ta.5510.1.S1_at At2g41225 - - 5e-2 At5g13700 ATPAO1 (ARABIDOPSIS THALIANA POLYAMINE OXIDASE 1) O.I. H.G. S.X.
0.76 90.1 Ta.9396.1.S1_x_at At2g41225 - - 5e-1 At5g57550 XTR3 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 3) O.I. H.G. S.X.
0.76 90.1 Ta.1807.1.S1_at At2g41225 - - 6e+0 At5g36925 unknown protein O.I. H.G. S.X.
0.75 89.8 Ta.18825.1.S1_at At2g41225 - - 1e+1 At5g38490 DNA binding O.I. H.G. S.X.
0.74 89.4 Ta.13153.1.S1_s_at At2g41225 - - 1e+0 At5g05060 - O.I. H.G. S.X.
0.65 83.9 Ta.26259.1.S1_at At2g41225 - - 4e+0 At2g32360 ubiquitin family protein O.I. H.G. S.X.
0.65 83.9 Ta.16474.1.S1_at At2g41225 - - 7e+0 At5g53895 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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