Co-expression analysis

Gene ID Contig13746_at
Gene name
Homology with ArabidopsisSimilar to At1g23540: protein kinase family protein (HF=8e-10)
Module size 7 genes
NF 0.42
%ile 57.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7589.50.94Contig13746_atContig13746--8e-10At1g23540protein kinase family proteinO.I.H.G.S.X.
0.6380.30.94Contig13663_atContig13663--6e-5At1g13460serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putativeO.I.H.G.S.X.
0.3849.50.95Contig18779_atContig18779--5e+0At4g16930disease resistance protein (TIR-NBS-LRR class), putativeO.I.H.G.S.X.
0.3849.50.96Contig22351_atContig22351--2e+0At3g20020PRMT6 (PROTEIN ARGININE METHYLTRANSFERASE 6)O.I.H.G.S.X.
0.3240.30.95Contig15431_atContig15431--2e+0At4g13660PRR2 (PINORESINOL REDUCTASE 2)O.I.H.G.S.X.
0.2935.50.95Contig1138_atContig1138--2e-14At1g07790HTB1O.I.H.G.S.X.
0.2732.10.95Contig24094_atContig24094--1e+0At1g19115unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.099.3GSM238427Endosperm 72 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
11.199.2GSM238425Endosperm 48 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.298.7GSM238424Endosperm 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.798.6GSM238422Endosperm 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.397.4GSM238426Endosperm 72 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.695.3GSM282028Malting_day1_Merit_rep1GSE11200Expression data from malting barley seedsLink to GEO
3.394.6GSM282037Malting_day1_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.394.6GSM282029Malting_day1_Merit_rep3GSE11200Expression data from malting barley seedsLink to GEO
2.993.4GSM419976Palea_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
2.993.4GSM440964Control palea_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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