Co-expression analysis

Gene ID Contig1373_at
Gene name
Homology with ArabidopsisSimilar to At2g02000: GAD3 (glutamate decarboxylase 3) (HF=4e-40)
Module size 12 genes
NF 0.33
%ile 44.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6178.70.85Contig1373_atContig1373--4e-40At2g02000GAD3 (glutamate decarboxylase 3)O.I.H.G.S.X.
0.6380.30.94Contig8979_atContig8979--7e-7At5g58490cinnamoyl-CoA reductase familyO.I.H.G.S.X.
0.5572.00.94Contig2596_atContig2596--1e-114At1g29310P-P-bond-hydrolysis-driven protein transmembrane transporterO.I.H.G.S.X.
0.5066.90.93Contig2753_atContig2753--7e-1At5g41600BTI3 (VIRB2-INTERACTING PROTEIN 3)O.I.H.G.S.X.
0.4053.10.95Contig20730_s_atContig20730--5e-3At1g73885unknown proteinO.I.H.G.S.X.
0.3545.10.96Contig14183_s_atContig14183--1e+0At3g05170phosphoglycerate/bisphosphoglycerate mutase family proteinO.I.H.G.S.X.
0.3342.60.96Contig44_atContig44--3e-23At5g02500HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)O.I.H.G.S.X.
0.3240.30.94Contig4539_atContig4539--3e-10At5g26830threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS)O.I.H.G.S.X.
0.2528.90.92Contig19817_s_atContig19817--5e+0At5g49050-O.I.H.G.S.X.
0.2528.90.96Contig12345_atContig12345--2e-29At4g17300NS1O.I.H.G.S.X.
0.1716.90.92Contig16102_atContig16102--2e-13At4g19540INDL (IND1(IRON-SULFUR PROTEIN REQUIRED FOR NADH DEHYDROGENASE)-LIKE)O.I.H.G.S.X.
0.108.40.90Contig10396_atContig10396--2e+0At4g05270ubiquitin family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.097.2GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.796.9GSM215730Control (DMSO) treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
3.895.7GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
3.695.3GSM215727Control (DMSO) treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
3.695.3GSM431573pathogen isolates: Polymyxa betae - rep3GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
3.595.1GSM282039Malting_day4_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.294.3GSM215728gibberellin treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
3.294.3GSM282033Malting_day4_Harrington_rep4GSE11200Expression data from malting barley seedsLink to GEO
3.194.1GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO
3.194.1GSM215731gibberellin treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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