Co-expression analysis

Gene ID Contig13731_at
Gene name
Homology with ArabidopsisSimilar to At3g10380: SEC8 (SUBUNIT OF EXOCYST COMPLEX 8) (HF=4e-2)
Module size 6 genes
NF 0.11
%ile 14.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7790.80.93Contig13731_atContig13731--4e-2At3g10380SEC8 (SUBUNIT OF EXOCYST COMPLEX 8)O.I.H.G.S.X.
0.2528.90.94Contig4373_atContig4373--4e-2At1g764703-beta-hydroxy-delta5-steroid dehydrogenase/ binding / catalytic/ cinnamoyl-CoA reductaseO.I.H.G.S.X.
0.2122.60.93Contig7420_atContig7420--1e-5At4g15470-O.I.H.G.S.X.
0.1412.90.94Contig6604_s_atContig6604--1e-4At1g18100E12A11O.I.H.G.S.X.
0.054.10.93Contig22133_atContig22133--6e+0At5g4876060S ribosomal protein L13A (RPL13aD)O.I.H.G.S.X.
0.043.40.94Contig4366_atContig4366--5e-16At5g49810MMTO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.4356.40.88HP01B12w_atHP01B12w--5e+0At5g42640zinc finger (C2H2 type) family proteinO.I.H.G.S.X.
0.4053.10.90Contig16877_atContig16877--1e+0At5g09960unknown proteinO.I.H.G.S.X.
0.3849.50.91Contig27_s_atContig27--5e-2At3g07230wound-responsive protein-relatedO.I.H.G.S.X.
0.3647.10.91Contig6824_atContig6824--8e-1At2g15535LCR10 (Low-molecular-weight cysteine-rich 10)O.I.H.G.S.X.
0.3647.10.92Contig6770_atContig6770--4e+0At5g08055-O.I.H.G.S.X.
0.3545.10.90Contig10900_atContig10900--3e-25At1g73110ribulose bisphosphate carboxylase/oxygenase activase, putative / RuBisCO activase, putativeO.I.H.G.S.X.
0.2935.50.90Contig10564_atContig10564--5e-1At1g51090heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.2732.10.89HU09H07u_atHU09H07u--1e+1At5g66816unknown proteinO.I.H.G.S.X.
0.2021.10.92Contig3300_atContig3300--3e-44At4g15530PPDK (pyruvate orthophosphate dikinase)O.I.H.G.S.X.
0.1919.60.90Contig6570_atContig6570--1e-2At1g75388CPuORF5 (Conserved peptide upstream open reading frame 5)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.997.9GSM261068Albina f-17 Control rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
5.997.9GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.396.4GSM261069Albina f-17 Control rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.993.4GSM261064Xantha s-46 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.491.4GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
2.491.4GSM146370Golden Promise shoot Control, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.390.9GSM261030Dicktoo-control-rep1GSE10329Low temperature stress in cv. DicktooLink to GEO
2.390.9GSM146378Maythorpe shoot Salt, biological rep 1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.290.3GSM146373Golden Promise shoot Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.290.3GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage