Co-expression analysis

Gene ID Contig13731_at
Gene name
Homology with ArabidopsisSimilar to At3g10380: SEC8 (SUBUNIT OF EXOCYST COMPLEX 8) (HF=4e-2)
Module size 6 genes
NF 0.11
%ile 14.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7790.80.93Contig13731_atContig13731--4e-2At3g10380SEC8 (SUBUNIT OF EXOCYST COMPLEX 8)O.I.H.G.S.X.
0.2528.90.94Contig4373_atContig4373--4e-2At1g764703-beta-hydroxy-delta5-steroid dehydrogenase/ binding / catalytic/ cinnamoyl-CoA reductaseO.I.H.G.S.X.
0.2122.60.93Contig7420_atContig7420--1e-5At4g15470-O.I.H.G.S.X.
0.1412.90.94Contig6604_s_atContig6604--1e-4At1g18100E12A11O.I.H.G.S.X.
0.054.10.93Contig22133_atContig22133--6e+0At5g4876060S ribosomal protein L13A (RPL13aD)O.I.H.G.S.X.
0.043.40.94Contig4366_atContig4366--5e-16At5g49810MMTO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.997.9GSM261068Albina f-17 Control rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
5.997.9GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.396.4GSM261069Albina f-17 Control rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.993.4GSM261064Xantha s-46 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.491.4GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
2.491.4GSM146370Golden Promise shoot Control, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.390.9GSM261030Dicktoo-control-rep1GSE10329Low temperature stress in cv. DicktooLink to GEO
2.390.9GSM146378Maythorpe shoot Salt, biological rep 1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.290.3GSM146373Golden Promise shoot Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.290.3GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.7296.1.A1_at, orthologous to the query gene, Contig13731_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9799.9Zm.7296.1.A1_atAt3g10380hypothetical protein LOC100279763-7e-1At5g53050hydrolase, alpha/beta fold family proteinO.I.H.G.S.X.
0.3742.3Zm.14824.1.S1_atAt3g10380hypothetical protein LOC100217247 /// m26 protein-5e-1At2g16600ROC3O.I.H.G.S.X.
0.3538.9Zm.13185.1.A1_atAt3g10380--1e-22At3g13060-O.I.H.G.S.X.
0.3233.4Zm.400.2.S1_atAt3g10380Pyruvate dehydrogenase (lipoamide) kinase1-3e-28At3g06483PDK (PYRUVATE DEHYDROGENASE KINASE)O.I.H.G.S.X.
0.3131.6Zm.3497.1.A1_atAt3g10380hypothetical protein LOC100272844-7e-31At4g31870ATGPX7 (glutathione peroxidase 7)O.I.H.G.S.X.
0.3029.8Zm.10431.1.S1_atAt3g10380--1e+1At5g01300phosphatidylethanolamine-binding family proteinO.I.H.G.S.X.
0.2928.1Zm.8314.1.A1_atAt3g10380hypothetical protein LOC100277461-6e+0At2g38640unknown proteinO.I.H.G.S.X.
0.2724.6Zm.6142.1.A1_atAt3g10380annexin p33-2e-1At5g10220ANN6 (ANNEXIN ARABIDOPSIS 6)O.I.H.G.S.X.
0.2622.7Zm.5847.1.A1_atAt3g10380hypothetical protein LOC100278793-4e-10At3g19900unknown proteinO.I.H.G.S.X.
0.2622.7Zm.17612.1.S1_atAt3g10380--1e-1At5g66675unknown proteinO.I.H.G.S.X.
0.2521.3ZmAffx.1194.1.S1_atAt3g10380--4e+0At5g59990-O.I.H.G.S.X.
0.2521.3Zm.13199.1.S1_atAt3g10380hypothetical protein LOC100191826-2e-7At3g17465RPL3P (RIBOSOMAL PROTEIN L3 PLASTID)O.I.H.G.S.X.
0.2521.3Zm.17395.1.A1_atAt3g10380hypothetical protein LOC100191730-5e+0At2g22920serine carboxypeptidase S10 family proteinO.I.H.G.S.X.
0.2521.3Zm.5161.1.S1_atAt3g10380leafbladeless1-1e+0At1g54170CID3 (CTC-Interacting Domain 3)O.I.H.G.S.X.
0.2419.8ZmAffx.1011.1.A1_atAt3g10380--8e-1At3g28190unknown proteinO.I.H.G.S.X.
0.2419.8Zm.18481.1.A1_atAt3g10380--2e+1At5g55570unknown proteinO.I.H.G.S.X.
0.2318.6Zm.4434.1.S1_atAt3g10380--2e+0At4g10925F-box family proteinO.I.H.G.S.X.
0.2318.6Zm.2977.1.A1_atAt3g10380--1e-5At2g40280dehydration-responsive family proteinO.I.H.G.S.X.
0.2216.9Zm.5163.1.S1_atAt3g10380gda-1-7e-20At3g27090-O.I.H.G.S.X.
0.2115.5Zm.6241.1.A1_atAt3g10380hypothetical protein LOC100274594-3e-1At3g56370leucine-rich repeat transmembrane protein kinase, putativeO.I.H.G.S.X.
0.2115.5Zm.6219.1.A1_atAt3g10380--6e+0At4g29035-O.I.H.G.S.X.
0.2115.5Zm.5851.6.A1_a_atAt3g10380MADS box protein-2e-8At4g18960AG (AGAMOUS)O.I.H.G.S.X.
0.2014.2Zm.5481.1.A1_atAt3g10380--7e-2At5g47455unknown proteinO.I.H.G.S.X.
0.2014.2Zm.9311.1.A1_a_atAt3g10380hypothetical protein LOC100274965-5e+0At2g29180unknown proteinO.I.H.G.S.X.
0.1912.8Zm.7091.1.A1_atAt3g10380Chlorophyll a/b-binding apoprotein CP24 precursor-3e-15At1g15820LHCB6 (LIGHT HARVESTING COMPLEX PSII SUBUNIT 6)O.I.H.G.S.X.
0.1811.6Zm.2903.1.A1_atAt3g10380hypothetical protein LOC100274564-9e-8At5g62000ARF2 (AUXIN RESPONSE FACTOR 2)O.I.H.G.S.X.
0.169.4Zm.871.1.A1_a_atAt3g10380--5e-4At3g06470GNS1/SUR4 membrane family proteinO.I.H.G.S.X.
0.169.4Zm.10534.1.A1_x_atAt3g10380receptor protein kinase CLAVATA1-2e+0At2g36890RAX2 (REGULATOR OF AXILLARY MERISTEMS 2)O.I.H.G.S.X.
0.147.7Zm.6863.2.A1_atAt3g10380hypothetical protein LOC100193970-7e-67At1g48410AGO1 (ARGONAUTE 1)O.I.H.G.S.X.
0.136.8Zm.463.1.A1_atAt3g10380viviparous14-5e-6At3g14440NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3)O.I.H.G.S.X.
0.125.9Zm.18949.1.A1_atAt3g10380hypothetical protein LOC100280231-4e-2At4g37550formamidase, putative / formamide amidohydrolase, putativeO.I.H.G.S.X.
0.125.9Zm.17248.2.S1_a_atAt3g10380hypothetical protein LOC100280404-3e-10At5g37510EMB1467 (embryo defective 1467)O.I.H.G.S.X.
0.104.6Zm.4383.1.S1_atAt3g10380hypothetical protein LOC100193621-4e-11At2g25950unknown proteinO.I.H.G.S.X.
0.094.0ZmAffx.736.2.A1_atAt3g10380--3e+0At1g14687AtHB32 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 32)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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