Co-expression analysis

Gene ID Contig13731_at
Gene name
Homology with ArabidopsisSimilar to At3g10380: SEC8 (SUBUNIT OF EXOCYST COMPLEX 8) (HF=4e-2)
Module size 6 genes
NF 0.11
%ile 14.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7790.80.93Contig13731_atContig13731--4e-2At3g10380SEC8 (SUBUNIT OF EXOCYST COMPLEX 8)O.I.H.G.S.X.
0.2528.90.94Contig4373_atContig4373--4e-2At1g764703-beta-hydroxy-delta5-steroid dehydrogenase/ binding / catalytic/ cinnamoyl-CoA reductaseO.I.H.G.S.X.
0.2122.60.93Contig7420_atContig7420--1e-5At4g15470-O.I.H.G.S.X.
0.1412.90.94Contig6604_s_atContig6604--1e-4At1g18100E12A11O.I.H.G.S.X.
0.054.10.93Contig22133_atContig22133--6e+0At5g4876060S ribosomal protein L13A (RPL13aD)O.I.H.G.S.X.
0.043.40.94Contig4366_atContig4366--5e-16At5g49810MMTO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.997.9GSM261068Albina f-17 Control rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
5.997.9GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.396.4GSM261069Albina f-17 Control rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.993.4GSM261064Xantha s-46 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.491.4GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
2.491.4GSM146370Golden Promise shoot Control, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.390.9GSM261030Dicktoo-control-rep1GSE10329Low temperature stress in cv. DicktooLink to GEO
2.390.9GSM146378Maythorpe shoot Salt, biological rep 1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.290.3GSM146373Golden Promise shoot Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.290.3GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1610985_at, orthologous to the query gene, Contig13731_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5072.71610985_atAt3g10380--4e+0At2g13510unknown proteinO.I.H.G.S.X.
0.1819.41612983_atAt3g10380hypothetical protein LOC100249094-1e-1At3g15790MBD11O.I.H.G.S.X.
0.1718.21606871_atAt3g10380hypothetical protein LOC100265666-1e-3At4g11090unknown proteinO.I.H.G.S.X.
0.1718.21616046_atAt3g10380--9e-6At1g08280glycosyl transferase family 29 protein / sialyltransferase family proteinO.I.H.G.S.X.
0.1414.41608439_atAt3g10380hypothetical protein LOC100256907-4e+0At5g12990CLE40 (CLAVATA3/ESR-RELATED 40)O.I.H.G.S.X.
0.088.51622267_atAt3g10380hypothetical protein LOC100250166-7e-2At1g09500cinnamyl-alcohol dehydrogenase family / CAD familyO.I.H.G.S.X.
0.088.51616661_atAt3g10380--7e-9At3g22190IQD5 (IQ-domain 5)O.I.H.G.S.X.
0.077.81621150_atAt3g10380hypothetical protein LOC100248338-1e-8At5g39040ATTAP2O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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