Co-expression analysis

Gene ID	Contig13731_at
Gene name
Homology with Arabidopsis	Similar to At3g10380: SEC8 (SUBUNIT OF EXOCYST COMPLEX 8) (HF=4e-2)
Module size	6 genes
NF	0.11
%ile	14.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	0.93	Contig13731_at	Contig13731	-	-	4e-2	At3g10380	SEC8 (SUBUNIT OF EXOCYST COMPLEX 8)	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.94	Contig4373_at	Contig4373	-	-	4e-2	At1g76470	3-beta-hydroxy-delta5-steroid dehydrogenase/ binding / catalytic/ cinnamoyl-CoA reductase	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.93	Contig7420_at	Contig7420	-	-	1e-5	At4g15470	-	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.94	Contig6604_s_at	Contig6604	-	-	1e-4	At1g18100	E12A11	O.I.	H.G.	S.X.	Please select
0.05	4.1	0.93	Contig22133_at	Contig22133	-	-	6e+0	At5g48760	60S ribosomal protein L13A (RPL13aD)	O.I.	H.G.	S.X.	Please select
0.04	3.4	0.94	Contig4366_at	Contig4366	-	-	5e-16	At5g49810	MMT	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.9	97.9	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.9	97.9	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.3	96.4	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.9	93.4	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.4	91.4	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.4	91.4	GSM146370	Golden Promise shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.3	90.9	GSM261030	Dicktoo-control-rep1	GSE10329	Low temperature stress in cv. Dicktoo
2.3	90.9	GSM146378	Maythorpe shoot Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.2	90.3	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.2	90.3	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots

Inter-species module comparison

A co-expression module including the grape gene, 1610985_at, orthologous to the query gene, Contig13731_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	72.7	1610985_at	At3g10380	-	-	4e+0	At2g13510	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	19.4	1612983_at	At3g10380	hypothetical protein LOC100249094	-	1e-1	At3g15790	MBD11	O.I.	H.G.	S.X.	Please select
0.17	18.2	1606871_at	At3g10380	hypothetical protein LOC100265666	-	1e-3	At4g11090	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	18.2	1616046_at	At3g10380	-	-	9e-6	At1g08280	glycosyl transferase family 29 protein / sialyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.14	14.4	1608439_at	At3g10380	hypothetical protein LOC100256907	-	4e+0	At5g12990	CLE40 (CLAVATA3/ESR-RELATED 40)	O.I.	H.G.	S.X.	Please select
0.08	8.5	1622267_at	At3g10380	hypothetical protein LOC100250166	-	7e-2	At1g09500	cinnamyl-alcohol dehydrogenase family / CAD family	O.I.	H.G.	S.X.	Please select
0.08	8.5	1616661_at	At3g10380	-	-	7e-9	At3g22190	IQD5 (IQ-domain 5)	O.I.	H.G.	S.X.	Please select
0.07	7.8	1621150_at	At3g10380	hypothetical protein LOC100248338	-	1e-8	At5g39040	ATTAP2	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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