Co-expression analysis

Gene ID Contig13731_at
Gene name
Homology with ArabidopsisSimilar to At3g10380: SEC8 (SUBUNIT OF EXOCYST COMPLEX 8) (HF=4e-2)
Module size 6 genes
NF 0.11
%ile 14.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7790.80.93Contig13731_atContig13731--4e-2At3g10380SEC8 (SUBUNIT OF EXOCYST COMPLEX 8)O.I.H.G.S.X.
0.2528.90.94Contig4373_atContig4373--4e-2At1g764703-beta-hydroxy-delta5-steroid dehydrogenase/ binding / catalytic/ cinnamoyl-CoA reductaseO.I.H.G.S.X.
0.2122.60.93Contig7420_atContig7420--1e-5At4g15470-O.I.H.G.S.X.
0.1412.90.94Contig6604_s_atContig6604--1e-4At1g18100E12A11O.I.H.G.S.X.
0.054.10.93Contig22133_atContig22133--6e+0At5g4876060S ribosomal protein L13A (RPL13aD)O.I.H.G.S.X.
0.043.40.94Contig4366_atContig4366--5e-16At5g49810MMTO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.997.9GSM261068Albina f-17 Control rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
5.997.9GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.396.4GSM261069Albina f-17 Control rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.993.4GSM261064Xantha s-46 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.491.4GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
2.491.4GSM146370Golden Promise shoot Control, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.390.9GSM261030Dicktoo-control-rep1GSE10329Low temperature stress in cv. DicktooLink to GEO
2.390.9GSM146378Maythorpe shoot Salt, biological rep 1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.290.3GSM146373Golden Promise shoot Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.290.3GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g10380, orthologous to the query gene, Contig13731_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.6176.7At3g10380820201SEC8 (SUBUNIT OF EXOCYST COMPLEX 8)Subunit of the Putative Arabidopsis Exocyst ComplexO.I.H.G.S.X.
0.6781.6At5g14950831347GMII (GOLGI ALPHA-MANNOSIDASE II)Encodes a golgi alpha-mannosidase, an enzyme responsible for the formation of major complex-type N-glycans.O.I.H.G.S.X.
0.6176.7At1g21630838765calcium-binding EF hand family proteinF:calcium ion binding;P:unknown;C:cytosol, plasma membrane;BMOFPVAO.I.H.G.S.X.
0.6075.7At2g05170815065ATVPS11Homologous to yeast VPS11. Forms a complex with VCL1 and AtVPS33. Involved in vacuolar biogenesis.O.I.H.G.S.X.
0.5773.8At5g35980833590protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cytosol;MOPFBVAO.I.H.G.S.X.
0.5267.4At3g07100819896protein transport protein Sec24, putativeF:protein binding, transporter activity, zinc ion binding;P:intracellular protein transport, transport, ER to Golgi vesicle-mediated transport;C:COPII vesicle coat;MFBOPVAO.I.H.G.S.X.
0.5267.4At5g06600830548UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12)Encodes a ubiquitin-specific protease.O.I.H.G.S.X.
0.5065.3At5g18190831937protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MBOPFVAO.I.H.G.S.X.
0.4862.5At5g39500833946pattern formation protein, putativeF:ARF guanyl-nucleotide exchange factor activity;P:regulation of ARF protein signal transduction;C:intracellular;MFOPBO.I.H.G.S.X.
0.4862.5At3g50590824223nucleotide bindingF:nucleotide binding;P:biological_process unknown;C:plasma membrane;MBFOPVO.I.H.G.S.X.
0.4457.2At2g27900817335unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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