CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig13731_at

Gene name
Homology with Arabidopsis Similar to At3g10380: SEC8 (SUBUNIT OF EXOCYST COMPLEX 8) (HF=4e-2)

Module size 6 genes

NF 0.11

%ile 14.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 90.8 0.93 Contig13731_at Contig13731 - - 4e-2 At3g10380 SEC8 (SUBUNIT OF EXOCYST COMPLEX 8) O.I. H.G. S.X.
0.25 28.9 0.94 Contig4373_at Contig4373 - - 4e-2 At1g76470 3-beta-hydroxy-delta5-steroid dehydrogenase/ binding / catalytic/ cinnamoyl-CoA reductase O.I. H.G. S.X.
0.21 22.6 0.93 Contig7420_at Contig7420 - - 1e-5 At4g15470 - O.I. H.G. S.X.
0.14 12.9 0.94 Contig6604_s_at Contig6604 - - 1e-4 At1g18100 E12A11 O.I. H.G. S.X.
0.05 4.1 0.93 Contig22133_at Contig22133 - - 6e+0 At5g48760 60S ribosomal protein L13A (RPL13aD) O.I. H.G. S.X.
0.04 3.4 0.94 Contig4366_at Contig4366 - - 5e-16 At5g49810 MMT O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.9 97.9 GSM261068 Albina f-17 Control rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.9 97.9 GSM261070 Albina f-17 Control rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.3 96.4 GSM261069 Albina f-17 Control rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.9 93.4 GSM261064 Xantha s-46 Control rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.4 91.4 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.4 91.4 GSM146370 Golden Promise shoot Control, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.3 90.9 GSM261030 Dicktoo-control-rep1 GSE10329 Low temperature stress in cv. Dicktoo
2.3 90.9 GSM146378 Maythorpe shoot Salt, biological rep 1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.2 90.3 GSM146373 Golden Promise shoot Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.2 90.3 GSM382234 Root_Hg3 GSE15295 Mercury toxicity in barley roots

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g10380, orthologous to the query gene, Contig13731_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.61 76.7 At3g10380 820201 SEC8 (SUBUNIT OF EXOCYST COMPLEX 8) Subunit of the Putative Arabidopsis Exocyst Complex O.I. H.G. S.X.
0.67 81.6 At5g14950 831347 GMII (GOLGI ALPHA-MANNOSIDASE II) Encodes a golgi alpha-mannosidase, an enzyme responsible for the formation of major complex-type N-glycans. O.I. H.G. S.X.
0.61 76.7 At1g21630 838765 calcium-binding EF hand family protein F:calcium ion binding;P:unknown;C:cytosol, plasma membrane;BMOFPVA O.I. H.G. S.X.
0.60 75.7 At2g05170 815065 ATVPS11 Homologous to yeast VPS11. Forms a complex with VCL1 and AtVPS33. Involved in vacuolar biogenesis. O.I. H.G. S.X.
0.57 73.8 At5g35980 833590 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cytosol;MOPFBVA O.I. H.G. S.X.
0.52 67.4 At3g07100 819896 protein transport protein Sec24, putative F:protein binding, transporter activity, zinc ion binding;P:intracellular protein transport, transport, ER to Golgi vesicle-mediated transport;C:COPII vesicle coat;MFBOPVA O.I. H.G. S.X.
0.52 67.4 At5g06600 830548 UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) Encodes a ubiquitin-specific protease. O.I. H.G. S.X.
0.50 65.3 At5g18190 831937 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MBOPFVA O.I. H.G. S.X.
0.48 62.5 At5g39500 833946 pattern formation protein, putative F:ARF guanyl-nucleotide exchange factor activity;P:regulation of ARF protein signal transduction;C:intracellular;MFOPB O.I. H.G. S.X.
0.48 62.5 At3g50590 824223 nucleotide binding F:nucleotide binding;P:biological_process unknown;C:plasma membrane;MBFOPV O.I. H.G. S.X.
0.44 57.2 At2g27900 817335 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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