Co-expression analysis

Gene ID Contig13729_at
Gene name
Homology with ArabidopsisSimilar to At4g33080: protein kinase, putative (HF=4e-8)
Module size 9 genes
NF 0.12
%ile 14.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5774.90.81Contig13729_atContig13729--4e-8At4g33080protein kinase, putativeO.I.H.G.S.X.
0.5066.90.92rbags19e09_s_atrbags19e09--3e+0At1g37150HCS2 (holocarboxylase synthetase 2)O.I.H.G.S.X.
0.5066.90.93Contig18655_atContig18655--1e+0At3g63250HMT2 (HOMOCYSTEINE METHYLTRANSFERASE 2)O.I.H.G.S.X.
0.5066.90.94Contig13113_atContig13113--1e-2At5g02760protein phosphatase 2C family protein / PP2C family proteinO.I.H.G.S.X.
0.2528.90.92Contig14698_atContig14698--7e-6At5g15070acid phosphatase/ oxidoreductase/ transition metal ion bindingO.I.H.G.S.X.
0.2326.10.87Contig13952_atContig13952--2e+0At3g56910PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5)O.I.H.G.S.X.
0.043.40.87Contig9267_s_atContig9267--3e+0At5g28750thylakoid assembly protein, putativeO.I.H.G.S.X.
0.032.60.85Contig7015_atContig7015--1e-21At5g05200ABC1 family proteinO.I.H.G.S.X.
0.032.60.88Contig17553_atContig17553--2e-34At1g08040unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
31.599.9GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
12.599.4GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.296.3GSM282038Malting_kilned_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
3.294.3GSM431547pathogen isolates: Mock - rep2GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
3.294.3GSM431546pathogen isolates: Mock - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
3.194.1GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.194.1GSM261079Albina e-16 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.093.8GSM419975Palea_Rep1GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
3.093.8GSM440963Control palea_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
2.993.4GSM431571pathogen isolates: Polymyxa betae - rep1GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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