Co-expression analysis

Gene ID	Contig13704_at
Gene name
Homology with Arabidopsis	Similar to At5g56100: glycine-rich protein / oleosin (HF=2e+0)
Module size	6 genes
NF	0.52
%ile	71.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	88.7	0.93	Contig13704_at	Contig13704	-	-	2e+0	At5g56100	glycine-rich protein / oleosin	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.93	Contig9075_s_at	Contig9075	-	-	1e-1	At5g59990	-	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.94	Contig12085_at	Contig12085	-	-	1e-2	At5g63260	zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.93	HV_CEa0003B14r2_at	HV_CEa0003B14r2	-	-	8e-1	At4g24026	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.93	HVSMEk0016N13r2_at	HVSMEk0016N13r2	-	-	3e-1	At5g03660	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.93	Contig19683_at	Contig19683	-	-	1e+0	At3g24820	BSD domain-containing protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.3	99.5	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
12.0	99.3	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
11.9	99.3	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
10.6	99.2	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
10.2	99.1	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.4	98.8	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.0	98.4	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.5	98.2	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.9	97.9	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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