Co-expression analysis

Gene ID	Contig13701_at
Gene name
Homology with Arabidopsis	Similar to At3g49670: BAM2 (BARELY ANY MERISTEM 2) (HF=3e-12)
Module size	6 genes
NF	0.21
%ile	25.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.85	Contig13701_at	Contig13701	-	-	3e-12	At3g49670	BAM2 (BARELY ANY MERISTEM 2)	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.94	Contig2103_at	Contig2103	-	-	3e-24	At1g33140	PGY2 (PIGGYBACK2)	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.92	Contig12792_at	Contig12792	-	-	4e-12	At4g38730	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.94	Contig15565_at	Contig15565	-	-	6e+0	At4g22212	-	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.95	Contig23037_at	Contig23037	-	-	5e+0	At4g37235	unknown protein	O.I.	H.G.	S.X.	Please select
0.09	7.4	0.95	Contig10050_s_at	Contig10050	-	-	5e-2	At2g25052	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.1	98.0	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.5	97.6	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM130800	control, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
4.7	96.9	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
4.1	96.2	GSM146375	Maythorpe shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.0	96.0	GSM146380	Maythorpe shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.0	96.0	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.9	95.8	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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