Co-expression analysis

Gene ID Contig13678_at
Gene name
Homology with ArabidopsisSimilar to At3g26744: ICE1 (INDUCER OF CBF EXPRESSION 1) (HF=9e-6)
Module size 21 genes
NF 0.09
%ile 11.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9599.20.90Contig13678_atContig13678--9e-6At3g26744ICE1 (INDUCER OF CBF EXPRESSION 1)O.I.H.G.S.X.
0.3647.10.89Contig6531_atContig6531--6e-1At5g01070zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3037.00.93Contig7425_atContig7425--2e-41At1g62740stress-inducible protein, putativeO.I.H.G.S.X.
0.2427.20.94Contig585_x_atContig585--2e+0At4g33450MYB69 (MYB DOMAIN PROTEIN 69)O.I.H.G.S.X.
0.1919.60.93Contig6721_atContig6721--5e-1At2g42590GRF9 (GENERAL REGULATORY FACTOR 9)O.I.H.G.S.X.
0.1615.30.95Contig26273_atContig26273--2e-15At5g67320HOS15 (high expression of osmotically responsive genes 15)O.I.H.G.S.X.
0.1514.10.95Contig16244_s_atContig16244--2e+0At3g55240-O.I.H.G.S.X.
0.1412.90.92Contig6864_atContig6864--3e-5At5g58860CYP86A1 (CYTOCHROME P450 86 A1)O.I.H.G.S.X.
0.1311.60.95Contig15021_atContig15021--2e-1At5g09450pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.1311.60.95Contig13516_atContig13516--2e+0At1g35210unknown proteinO.I.H.G.S.X.
0.119.40.95Contig9283_atContig9283--1e-11At5g16940carbon-sulfur lyaseO.I.H.G.S.X.
0.108.40.93Contig9974_atContig9974--2e-14At1g26520-O.I.H.G.S.X.
0.097.40.92HV_CEa0002I08r2_atHV_CEa0002I08r2--1e+1At5g42990UBC18 (ubiquitin-conjugating enzyme 18)O.I.H.G.S.X.
0.086.50.94HO02E11S_s_atHO02E11S--1e-6At2g31010protein kinase family proteinO.I.H.G.S.X.
0.086.50.95Contig12434_atContig12434--2e-6At4g30930NFD1 (NUCLEAR FUSION DEFECTIVE 1)O.I.H.G.S.X.
0.075.80.95HVSMEg0010H15r2_atHVSMEg0010H15r2--3e+0At4g25630FIB2 (FIBRILLARIN 2)O.I.H.G.S.X.
0.064.80.95Contig11346_atContig11346--8e-1At1g6743060S ribosomal protein L17 (RPL17B)O.I.H.G.S.X.
0.054.10.93Contig6752_s_atContig6752--4e+0At2g33845DNA-binding protein-relatedO.I.H.G.S.X.
0.043.40.94Contig12816_atContig12816--1e-4At4g08455BTB/POZ domain-containing proteinO.I.H.G.S.X.
0.043.40.94Contig12607_atContig12607--4e-17At3g25990DNA-binding protein GT-1-relatedO.I.H.G.S.X.
0.032.60.93HVSMEb0012G11r2_s_atHVSMEb0012G11r2--4e+0At1g32540LOL1 (LSD ONE LIKE 1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.499.4GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.997.1GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
3.895.7GSM261062Xantha s-46 Control rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.695.3GSM261063Xantha s-46 Control rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.494.8GSM261074Albina e-16 Control rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.394.6GSM261075Albina e-16 Control rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.294.3GSM261065Xantha s-46 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.194.1GSM261069Albina f-17 Control rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.093.8GSM382233Root_Hg2GSE15295Mercury toxicity in barley rootsLink to GEO
3.093.8GSM261068Albina f-17 Control rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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