Co-expression analysis

Gene ID Contig13656_at
Gene name
Homology with ArabidopsisSimilar to At3g29250: copper ion binding / oxidoreductase (HF=2e+0)
Module size 6 genes
NF 0.62
%ile 84.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.96Contig13656_atContig13656--2e+0At3g29250copper ion binding / oxidoreductaseO.I.H.G.S.X.
0.7790.80.92Contig15282_atContig15282--2e+0At2g29450ATGSTU5 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 5)O.I.H.G.S.X.
0.7388.70.96Contig19499_atContig19499--5e+0At2g36330-O.I.H.G.S.X.
0.6380.30.94EBed02_SQ003_G01_atEBed02_SQ003_G01--3e+0At2g33750ATPUP2O.I.H.G.S.X.
0.4053.10.94Contig19910_atContig19910--3e-1At3g57950unknown proteinO.I.H.G.S.X.
0.4053.10.96Contig8304_s_atContig8304--1e+0At4g27280calcium-binding EF hand family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.599.5GSM419983Seed_Rep3GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
14.599.5GSM440977Control seed_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
12.899.4GSM440978Stressed seed_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
7.698.6GSM419982Seed_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
7.698.6GSM440976Control seed_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
5.497.5GSM440980Stressed seed_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
5.297.4GSM440960Stressed lemma_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.196.2GSM440972Stressed awn_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.795.5GSM71156Morex stress and unstress replicate 3GSE3170 Barley single feature polymorphisms and drought stress gene expressionLink to GEO
3.494.8GSM419975Palea_Rep1GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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