Co-expression analysis

Gene ID	Contig13652_at
Gene name
Homology with Arabidopsis	Similar to At1g32090: early-responsive to dehydration protein-related / ERD protein-related (HF=8e-7)
Module size	6 genes
NF	0.51
%ile	71.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.40	53.1	0.96	Contig13652_at	Contig13652	-	-	8e-7	At1g32090	early-responsive to dehydration protein-related / ERD protein-related	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.96	Contig17823_at	Contig17823	-	-	2e+0	At5g52720	metal ion binding	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.96	Contig24303_at	Contig24303	-	-	3e-1	At3g09800	protein binding	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.96	Contig4360_at	Contig4360	-	-	2e-6	At5g61500	ATG3	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.96	Contig16054_at	Contig16054	-	-	4e-1	At1g06830	glutaredoxin family protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.96	Contig20549_at	Contig20549	-	-	2e-27	At2g39480	PGP6 (P-GLYCOPROTEIN 6)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.5	98.2	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.3	97.4	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.9	97.1	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.3	96.4	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.0	96.0	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.9	95.8	GSM238420	Endosperm 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM238423	Endosperm 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.5	95.1	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.3	94.6	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the maize gene, Zm.5272.2.A1_a_at, orthologous to the query gene, Contig13652_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.76	91.1	Zm.5272.2.A1_a_at	At1g32090	-	-	4e-11	At4g22120	early-responsive to dehydration protein-related / ERD protein-related	O.I.	H.G.	S.X.	Please select
0.56	74.4	Zm.954.1.S1_at	At1g32090	hypothetical protein LOC100274537	-	1e+0	At1g05055	GTF2H2 (GENERAL TRANSCRIPTION FACTOR IIH 2)	O.I.	H.G.	S.X.	Please select
0.55	71.6	Zm.12555.1.A1_x_at	At1g32090	-	-	4e+0	At4g28170	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	69.1	Zm.16536.1.A1_a_at	At1g32090	hypothetical protein LOC100272866 /// spermidine synthase 1	-	1e-17	At1g23820	SPDS1 (spermidine synthase 1)	O.I.	H.G.	S.X.	Please select
0.51	66.4	Zm.14149.1.A1_at	At1g32090	-	-	1e+0	At5g55135	unknown protein	O.I.	H.G.	S.X.	Please select
0.49	61.9	Zm.17848.1.A1_s_at	At1g32090	hypothetical protein LOC100279789	-	2e+1	At5g27980	seed maturation family protein	O.I.	H.G.	S.X.	Please select
0.45	56.4	Zm.383.1.S1_s_at	At1g32090	leucine-rich repeat transmembrane protein kinase 2	-	1e-22	At3g14350	SRF7 (STRUBBELIG-RECEPTOR FAMILY 7)	O.I.	H.G.	S.X.	Please select
0.45	56.4	Zm.3086.2.A1_a_at	At1g32090	alpha-1,4-glucan-protein synthase	-	5e+0	At4g11350	transferase, transferring glycosyl groups	O.I.	H.G.	S.X.	Please select
0.44	55.7	Zm.2922.1.A1_at	At1g32090	-	-	9e+0	At4g21865	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	52.8	Zm.1046.1.S1_at	At1g32090	-	-	2e+0	At5g28610	-	O.I.	H.G.	S.X.	Please select
0.42	51.3	Zm.4278.1.A1_at	At1g32090	hypothetical protein LOC100279402	-	1e+1	At5g05550	transcription factor	O.I.	H.G.	S.X.	Please select
0.42	51.3	Zm.5018.3.A1_at	At1g32090	-	-	9e-1	At5g48920	TED7 (TRACHEARY ELEMENT DIFFERENTIATION-RELATED 7)	O.I.	H.G.	S.X.	Please select
0.37	42.3	Zm.3773.1.A1_at	At1g32090	Hypothetical protein LOC100193094	-	4e+0	At4g18620	-	O.I.	H.G.	S.X.	Please select
0.35	38.9	Zm.12656.1.S1_at	At1g32090	-	-	5e+0	At5g07020	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.34	37.2	Zm.1989.1.S1_at	At1g32090	hypothetical protein LOC100193882	-	3e-14	At2g41970	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.33	36.0	Zm.17902.1.A1_at	At1g32090	-	-	3e+0	At5g65350	histone H3	O.I.	H.G.	S.X.	Please select
0.31	31.6	Zm.17636.1.A1_at	At1g32090	-	-	1e+0	At5g34882	-	O.I.	H.G.	S.X.	Please select
0.30	29.8	Zm.16536.1.A1_at	At1g32090	spermidine synthase 1	-	1e-17	At1g23820	SPDS1 (spermidine synthase 1)	O.I.	H.G.	S.X.	Please select
0.30	29.8	Zm.12345.2.S1_at	At1g32090	-	-	4e+0	At5g08050	-	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.16547.1.A1_at	At1g32090	aldehyde dehydrogenase, dimeric NADP-preferring	-	6e+0	At3g10020	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	Zm.5018.2.S1_at	At1g32090	Hypothetical protein LOC100194303	-	4e-1	At5g49350	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage