Co-expression analysis

Gene ID	Contig13652_at
Gene name
Homology with Arabidopsis	Similar to At1g32090: early-responsive to dehydration protein-related / ERD protein-related (HF=8e-7)
Module size	6 genes
NF	0.51
%ile	71.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.40	53.1	0.96	Contig13652_at	Contig13652	-	-	8e-7	At1g32090	early-responsive to dehydration protein-related / ERD protein-related	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.96	Contig17823_at	Contig17823	-	-	2e+0	At5g52720	metal ion binding	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.96	Contig24303_at	Contig24303	-	-	3e-1	At3g09800	protein binding	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.96	Contig4360_at	Contig4360	-	-	2e-6	At5g61500	ATG3	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.96	Contig16054_at	Contig16054	-	-	4e-1	At1g06830	glutaredoxin family protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.96	Contig20549_at	Contig20549	-	-	2e-27	At2g39480	PGP6 (P-GLYCOPROTEIN 6)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.5	98.2	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.3	97.4	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.9	97.1	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.3	96.4	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.0	96.0	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.9	95.8	GSM238420	Endosperm 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM238423	Endosperm 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.5	95.1	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.3	94.6	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.202486.1.S1_at, orthologous to the query gene, Contig13652_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	93.6	PtpAffx.202486.1.S1_at	At1g32090	hypothetical protein	-	5e-15	At3g21620	early-responsive to dehydration protein-related / ERD protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	PtpAffx.206613.1.S1_at	At1g32090	hypothetical protein	-	4e-1	At1g66420	transcription regulator	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.58784.1.S1_at	At1g32090	GRAS family transcription factor	-	8e-1	At4g25890	60S acidic ribosomal protein P3 (RPP3A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.206332.1.S1_at	At1g32090	hypothetical protein	-	1e-9	At3g56100	MRLK (MERISTEMATIC RECEPTOR-LIKE KINASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.206221.1.S1_at	At1g32090	hypothetical protein	-	1e-3	At5g61270	PIF7 (PHYTOCHROME-INTERACTING FACTOR7)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.18931.1.A1_at	At1g32090	-	-	9e-8	At1g80190	PSF1 (PARTNER OF SLD FIVE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.11018.2.A1_a_at	At1g32090	hypothetical protein	-	1e-13	At5g13760	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.140423.1.A1_at	At1g32090	-	-	1e+0	At3g46360	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	PtpAffx.98646.1.S1_at	At1g32090	hypothetical protein	-	4e-1	At1g05740	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	PtpAffx.204783.1.S1_at	At1g32090	hypothetical protein	-	8e-10	At5g58480	glycosyl hydrolase family 17 protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage