CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig13652_at

Gene name
Homology with Arabidopsis Similar to At1g32090: early-responsive to dehydration protein-related / ERD protein-related (HF=8e-7)

Module size 6 genes

NF 0.51

%ile 71.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.40 53.1 0.96 Contig13652_at Contig13652 - - 8e-7 At1g32090 early-responsive to dehydration protein-related / ERD protein-related O.I. H.G. S.X.
0.83 94.0 0.96 Contig17823_at Contig17823 - - 2e+0 At5g52720 metal ion binding O.I. H.G. S.X.
0.67 84.7 0.96 Contig24303_at Contig24303 - - 3e-1 At3g09800 protein binding O.I. H.G. S.X.
0.60 77.3 0.96 Contig4360_at Contig4360 - - 2e-6 At5g61500 ATG3 O.I. H.G. S.X.
0.43 56.4 0.96 Contig16054_at Contig16054 - - 4e-1 At1g06830 glutaredoxin family protein O.I. H.G. S.X.
0.23 26.1 0.96 Contig20549_at Contig20549 - - 2e-27 At2g39480 PGP6 (P-GLYCOPROTEIN 6) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.5 98.2 GSM238433 Embryo 0 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
5.3 97.4 GSM238432 Embryo 0 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.9 97.1 GSM282041 Control_dryseed_Morex_rep2 GSE11200 Expression data from malting barley seeds
4.3 96.4 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.0 96.0 GSM261046 after 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.9 95.8 GSM238420 Endosperm 0 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.8 95.7 GSM238423 Endosperm 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.6 95.3 GSM372955 genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.5 95.1 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.3 94.6 GSM238422 Endosperm 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.17436.1.S1_at, orthologous to the query gene, Contig13652_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.6 GmaAffx.17436.1.S1_at At1g32090 - - 4e-9 At3g21620 early-responsive to dehydration protein-related / ERD protein-related O.I. H.G. S.X.
0.50 71.7 GmaAffx.47906.1.S1_at At1g32090 - - 8e-20 At1g14830 ADL1C (ARABIDOPSIS DYNAMIN-LIKE PROTEIN 1C) O.I. H.G. S.X.
0.31 42.2 GmaAffx.47906.2.S1_at At1g32090 - - 6e-42 At1g14830 ADL1C (ARABIDOPSIS DYNAMIN-LIKE PROTEIN 1C) O.I. H.G. S.X.
0.11 14.2 GmaAffx.43168.1.S1_at At1g32090 - - 4e-13 At1g62320 early-responsive to dehydration protein-related / ERD protein-related O.I. H.G. S.X.
0.10 13.0 GmaAffx.4539.1.S1_at At1g32090 - - 2e+0 At5g15690 - O.I. H.G. S.X.
0.06 9.0 GmaAffx.62043.1.S1_at At1g32090 - - 9e-10 At5g57270 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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