Co-expression analysis

Gene ID	Contig13583_at
Gene name
Homology with Arabidopsis	Similar to At3g60780: unknown protein (HF=6e+0)
Module size	10 genes
NF	0.31
%ile	40.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.1	0.91	Contig13583_at	Contig13583	-	-	6e+0	At3g60780	unknown protein	O.I.	H.G.	S.X.	Please select
0.70	86.0	0.93	Contig25386_at	Contig25386	-	-	3e+0	At3g26510	octicosapeptide/Phox/Bem1p (PB1) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.94	Contig6112_s_at	Contig6112	-	-	9e-2	At5g27700	structural constituent of ribosome	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.94	Contig7392_at	Contig7392	-	-	4e-15	At1g31190	IMPL1 (MYO-INOSITOL MONOPHOSPHATASE LIKE 1)	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.93	Contig6844_at	Contig6844	-	-	9e-3	At3g17160	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.94	Contig16870_at	Contig16870	-	-	5e-11	At2g36570	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.92	Contig9529_at	Contig9529	-	-	4e-4	At3g19910	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.94	Contig10814_at	Contig10814	-	-	5e-2	At3g02660	emb2768 (EMBRYO DEFECTIVE 2768)	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.95	Contig6680_at	Contig6680	-	-	2e-1	At2g23560	MES7 (METHYL ESTERASE 7)	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.94	Contig2550_x_at	Contig2550	pathogenesis-related protein 4	-	4e-4	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.6	97.7	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM398258	Martin_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.3	94.6	GSM398263	HS41-1_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.3	94.6	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.3	94.6	GSM398260	Martin_5d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.2	94.3	GSM398259	Martin_5d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.2	94.3	GSM398250	Martin_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.1	94.1	GSM281747	Genotype: Steptoe - rep3	GSE11182	Steptoe x Morex seedling leaf comparison
3.0	93.8	GSM398257	Martin_3d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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