Co-expression analysis

Gene ID Contig1356_s_at
Gene name
Homology with ArabidopsisSimilar to At4g02450: glycine-rich protein (HF=4e+0)
Module size 6 genes
NF 0.60
%ile 82.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7790.80.94Contig1356_s_atContig1356--4e+0At4g02450glycine-rich proteinO.I.H.G.S.X.
0.6077.30.94Contig6618_atContig6618--4e-1At5g51180unknown proteinO.I.H.G.S.X.
0.6077.30.95Contig4157_atContig4157--1e-25At1g60780HAP13 (HAPLESS 13)O.I.H.G.S.X.
0.5066.90.95Contig1470_s_atContig1470--6e-3At4g00610DNA-binding storekeeper protein-relatedO.I.H.G.S.X.
0.5066.90.95Contig11557_atContig11557--2e+0At5g27860unknown proteinO.I.H.G.S.X.
0.3545.10.94Contig9016_atContig9016--9e-7At5g22070unknown proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8694.80.92HVSMEm0003C21r2_atHVSMEm0003C21r2--5e+0At5g23470NLI interacting factor (NIF) family proteinO.I.H.G.S.X.
0.7589.50.92Contig15345_atContig15345--7e-3At5g05070zinc ion bindingO.I.H.G.S.X.
0.5975.80.91Contig19589_atContig19589--2e+0At3g25580thioredoxin-relatedO.I.H.G.S.X.
0.5572.00.91Contig195_atContig195--2e-19At2g4020560S ribosomal protein L41 (RPL41C)O.I.H.G.S.X.
0.5066.90.87Contig18091_atContig18091--2e+0At5g02020unknown proteinO.I.H.G.S.X.
0.5066.90.93Contig13767_atContig13767--8e+0At4g13615four F5 protein-related / 4F5 protein-relatedO.I.H.G.S.X.
0.5066.90.93HA10J02u_atHA10J02u--1e+0At2g03610F-box family proteinO.I.H.G.S.X.
0.5066.90.94Contig14848_atContig14848--5e+0At3g55240-O.I.H.G.S.X.
0.4458.90.94HB14O12r_atHB14O12r--4e+0At5g24316proline-rich family proteinO.I.H.G.S.X.
0.4356.40.90Contig7846_atContig7846--2e-14At5g53480importin beta-2, putativeO.I.H.G.S.X.
0.4255.20.88Contig15251_atContig15251--3e+0At5g05340peroxidase, putativeO.I.H.G.S.X.
0.4053.10.89Contig14511_atContig14511--1e-3At5g28630glycine-rich proteinO.I.H.G.S.X.
0.4053.10.92Contig10076_atContig10076--5e-15At4g13020MHKO.I.H.G.S.X.
0.3849.50.88rbags1g08_atrbags1g08--4e+0At5g12320ankyrin repeat family proteinO.I.H.G.S.X.
0.3647.10.92Contig16758_atContig16758--5e-1At4g39830L-ascorbate oxidase, putativeO.I.H.G.S.X.
0.3545.10.94Contig10922_atContig10922--3e-16At3g48380-O.I.H.G.S.X.
0.3342.60.90Contig17670_atContig17670--3e+0At5g48420unknown proteinO.I.H.G.S.X.
0.3240.30.93Contig10783_s_atContig10783--5e-26At5g63440unknown proteinO.I.H.G.S.X.
0.3138.60.89S0001100112G02F1_atS0001100112G02F1--6e+0At3g03405-O.I.H.G.S.X.
0.3037.00.88Contig5204_atContig5204--5e-1At5g47150YDG/SRA domain-containing proteinO.I.H.G.S.X.
0.2935.50.89Contig17759_atContig17759--4e-1At3g1151040S ribosomal protein S14 (RPS14B)O.I.H.G.S.X.
0.2935.50.90Contig10580_atContig10580--2e+0At2g03690coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family proteinO.I.H.G.S.X.
0.2935.50.91Contig14482_atContig14482--1e-4At3g48940remorin family proteinO.I.H.G.S.X.
0.2835.50.87Contig13922_atContig13922--2e+0At3g25720-O.I.H.G.S.X.
0.2732.10.91Contig12885_atContig12885--4e-12At3g48620-O.I.H.G.S.X.
0.2528.90.88Contig6984_s_atContig6984--2e-4At4g31580SRZ-22O.I.H.G.S.X.
0.2528.90.91Contig17832_atContig17832--2e+0At5g34883unknown proteinO.I.H.G.S.X.
0.2528.90.94Contig6619_atContig6619--2e-3At5g51180unknown proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.798.6GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
6.998.3GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
6.598.2GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
5.797.7GSM261073Albina f-17 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
5.397.4GSM398255Martin_3d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
5.297.4GSM398258Martin_5d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
4.997.1GSM398256Martin_3d_rep2GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
4.997.1GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.895.7GSM398260Martin_5d_rep3GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
3.795.5GSM398257Martin_3d_rep3GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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