Co-expression analysis

Gene ID	Contig1356_s_at
Gene name
Homology with Arabidopsis	Similar to At4g02450: glycine-rich protein (HF=4e+0)
Module size	6 genes
NF	0.60
%ile	82.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	0.94	Contig1356_s_at	Contig1356	-	-	4e+0	At4g02450	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.94	Contig6618_at	Contig6618	-	-	4e-1	At5g51180	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.95	Contig4157_at	Contig4157	-	-	1e-25	At1g60780	HAP13 (HAPLESS 13)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.95	Contig1470_s_at	Contig1470	-	-	6e-3	At4g00610	DNA-binding storekeeper protein-related	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.95	Contig11557_at	Contig11557	-	-	2e+0	At5g27860	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.94	Contig9016_at	Contig9016	-	-	9e-7	At5g22070	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.7	98.6	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.9	98.3	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.5	98.2	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.7	97.7	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.3	97.4	GSM398255	Martin_3d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.2	97.4	GSM398258	Martin_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.9	97.1	GSM398256	Martin_3d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.9	97.1	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.8	95.7	GSM398260	Martin_5d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.7	95.5	GSM398257	Martin_3d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

Inter-species module comparison

A co-expression module including the maize gene, ZmAffx.1073.1.A1_at, orthologous to the query gene, Contig1356_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.84	95.8	ZmAffx.1073.1.A1_at	At4g02450	glyoxylate reductase	-	3e+0	At5g60964	-	O.I.	H.G.	S.X.	Please select
0.41	49.7	Zm.12794.1.A1_at	At4g02450	protein kinase domain containing protein	-	8e-3	At5g53450	ORG1 (OBP3-responsive gene 1)	O.I.	H.G.	S.X.	Please select
0.41	49.7	Zm.17271.8.A1_at	At4g02450	40S ribosomal protein S10	-	3e-11	At5g52650	40S ribosomal protein S10 (RPS10C)	O.I.	H.G.	S.X.	Please select
0.40	48.5	Zm.5948.2.A1_at	At4g02450	-	-	1e+1	At5g08190	NF-YB12 (NUCLEAR FACTOR Y, SUBUNIT B12)	O.I.	H.G.	S.X.	Please select
0.31	31.6	Zm.19070.1.A1_at	At4g02450	glycylpeptide N-tetradecanoyltransferase 1	-	3e-2	At5g57020	NMT1 (MYRISTOYL-COA:PROTEIN N-MYRISTOYLTRANSFERASE)	O.I.	H.G.	S.X.	Please select
0.30	29.8	Zm.12934.1.A1_a_at	At4g02450	-	-	2e+0	At1g80200	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.13321.1.A1_at	At4g02450	hypothetical protein LOC100277614	-	2e-1	At1g09630	ATRAB11C (ARABIDOPSIS RAB GTPASE 11C)	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.18389.1.S1_at	At4g02450	-	-	8e-34	At1g02410	cytochrome c oxidase assembly protein CtaG / Cox11 family	O.I.	H.G.	S.X.	Please select
0.28	28.1	Zm.5372.1.S1_at	At4g02450	secondary cell wall-related glycosyltransferase family 8	-	5e-15	At3g18660	PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.23	18.6	Zm.10187.1.S1_at	At4g02450	hypothetical protein LOC100216724	-	9e-4	At5g51460	ATTPPA	O.I.	H.G.	S.X.	Please select
0.20	14.2	Zm.18302.1.A1_at	At4g02450	hypothetical protein LOC100276531	-	1e-3	At2g22250	aminotransferase class I and II family protein	O.I.	H.G.	S.X.	Please select
0.17	10.6	Zm.4689.1.S1_at	At4g02450	hypothetical protein LOC100276687	-	2e+0	At1g68500	unknown protein	O.I.	H.G.	S.X.	Please select
0.12	5.9	Zm.6655.1.A1_at	At4g02450	hypothetical protein LOC100193491	-	4e-21	At5g09660	PMDH2 (peroxisomal NAD-malate dehydrogenase 2)	O.I.	H.G.	S.X.	Please select
0.10	4.6	Zm.8890.1.S1_a_at	At4g02450	hypothetical protein LOC100191584	-	1e-8	At4g25820	XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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