Co-expression analysis

Gene ID	Contig1356_s_at
Gene name
Homology with Arabidopsis	Similar to At4g02450: glycine-rich protein (HF=4e+0)
Module size	6 genes
NF	0.60
%ile	82.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	0.94	Contig1356_s_at	Contig1356	-	-	4e+0	At4g02450	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.94	Contig6618_at	Contig6618	-	-	4e-1	At5g51180	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.95	Contig4157_at	Contig4157	-	-	1e-25	At1g60780	HAP13 (HAPLESS 13)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.95	Contig1470_s_at	Contig1470	-	-	6e-3	At4g00610	DNA-binding storekeeper protein-related	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.95	Contig11557_at	Contig11557	-	-	2e+0	At5g27860	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.94	Contig9016_at	Contig9016	-	-	9e-7	At5g22070	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.7	98.6	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.9	98.3	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.5	98.2	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.7	97.7	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.3	97.4	GSM398255	Martin_3d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.2	97.4	GSM398258	Martin_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.9	97.1	GSM398256	Martin_3d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.9	97.1	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.8	95.7	GSM398260	Martin_5d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.7	95.5	GSM398257	Martin_3d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

Inter-species module comparison

A co-expression module including the grape gene, 1610629_at, orthologous to the query gene, Contig1356_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	1610629_at	At4g02450	-	-	4e+0	At5g06030	self-incompatibility protein-related	O.I.	H.G.	S.X.	Please select
0.43	61.5	1617438_at	At4g02450	-	-	9e-1	At4g21500	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	1610470_at	At4g02450	-	-	1e-7	At5g15150	ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3)	O.I.	H.G.	S.X.	Please select
0.07	7.8	1619188_at	At4g02450	-	-	2e+0	At1g48940	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.06	6.8	1617917_at	At4g02450	-	-	4e+0	At1g53100	acetylglucosaminyltransferase	O.I.	H.G.	S.X.	Please select
0.04	5.2	1612237_at	At4g02450	-	-	8e-11	At4g24240	WRKY7	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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