Co-expression analysis

Gene ID	Contig1356_s_at
Gene name
Homology with Arabidopsis	Similar to At4g02450: glycine-rich protein (HF=4e+0)
Module size	6 genes
NF	0.60
%ile	82.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	0.94	Contig1356_s_at	Contig1356	-	-	4e+0	At4g02450	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.94	Contig6618_at	Contig6618	-	-	4e-1	At5g51180	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.95	Contig4157_at	Contig4157	-	-	1e-25	At1g60780	HAP13 (HAPLESS 13)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.95	Contig1470_s_at	Contig1470	-	-	6e-3	At4g00610	DNA-binding storekeeper protein-related	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.95	Contig11557_at	Contig11557	-	-	2e+0	At5g27860	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.94	Contig9016_at	Contig9016	-	-	9e-7	At5g22070	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.7	98.6	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.9	98.3	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.5	98.2	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.7	97.7	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.3	97.4	GSM398255	Martin_3d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.2	97.4	GSM398258	Martin_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.9	97.1	GSM398256	Martin_3d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.9	97.1	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.8	95.7	GSM398260	Martin_5d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.7	95.5	GSM398257	Martin_3d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.83377.1.S1_at, orthologous to the query gene, Contig1356_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.88	93.4	GmaAffx.83377.1.S1_at	At4g02450	-	-	5e-3	At1g32280	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.63	82.9	Gma.1528.1.S1_at	At4g02450	-	-	2e-21	At2g18300	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.38	53.3	GmaAffx.93131.1.S1_s_at	At4g02450	-	-	3e-2	At3g21510	AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1)	O.I.	H.G.	S.X.	Please select
0.32	43.7	Gma.16588.2.S1_at	At4g02450	-	-	1e-7	At1g05805	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.31	42.2	GmaAffx.81524.1.S1_s_at	At4g02450	-	-	2e+0	At1g33260	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.30	40.4	Gma.1370.1.S1_at	At4g02450	-	-	5e-2	At2g15230	ATLIP1 (Arabidopsis thaliana lipase 1)	O.I.	H.G.	S.X.	Please select
0.29	39.0	GmaAffx.1876.2.S1_at	At4g02450	-	-	5e-7	At3g62980	TIR1 (TRANSPORT INHIBITOR RESPONSE 1)	O.I.	H.G.	S.X.	Please select
0.23	29.9	Gma.6611.2.S1_s_at	At4g02450	phosphatidylinositol-specific phospholipase C /// phosphoinositide-specific phospholipase C P13	-	4e-28	At3g08510	ATPLC2 (PHOSPHOLIPASE C 2)	O.I.	H.G.	S.X.	Please select
0.22	28.1	GmaAffx.82452.1.S1_at	At4g02450	-	-	9e-4	At3g03860	ATAPRL5 (APR-like 5)	O.I.	H.G.	S.X.	Please select
0.20	25.1	GmaAffx.74306.1.S1_at	At4g02450	-	-	1e-46	At4g18700	CIPK12 (CBL-INTERACTING PROTEIN KINASE 12)	O.I.	H.G.	S.X.	Please select
0.20	25.1	GmaAffx.72081.1.S1_at	At4g02450	-	-	1e-4	At1g67530	armadillo/beta-catenin repeat family protein / U-box domain-containing family protein	O.I.	H.G.	S.X.	Please select
0.08	11.0	GmaAffx.88106.1.S1_at	At4g02450	-	-	2e+0	At3g15358	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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