CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig1356_s_at

Gene name
Homology with Arabidopsis Similar to At4g02450: glycine-rich protein (HF=4e+0)

Module size 6 genes

NF 0.60

%ile 82.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 90.8 0.94 Contig1356_s_at Contig1356 - - 4e+0 At4g02450 glycine-rich protein O.I. H.G. S.X.
0.60 77.3 0.94 Contig6618_at Contig6618 - - 4e-1 At5g51180 unknown protein O.I. H.G. S.X.
0.60 77.3 0.95 Contig4157_at Contig4157 - - 1e-25 At1g60780 HAP13 (HAPLESS 13) O.I. H.G. S.X.
0.50 66.9 0.95 Contig1470_s_at Contig1470 - - 6e-3 At4g00610 DNA-binding storekeeper protein-related O.I. H.G. S.X.
0.50 66.9 0.95 Contig11557_at Contig11557 - - 2e+0 At5g27860 unknown protein O.I. H.G. S.X.
0.35 45.1 0.94 Contig9016_at Contig9016 - - 9e-7 At5g22070 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.7 98.6 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.9 98.3 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.5 98.2 GSM261046 after 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.7 97.7 GSM261073 Albina f-17 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.3 97.4 GSM398255 Martin_3d_rep1 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.2 97.4 GSM398258 Martin_5d_rep1 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.9 97.1 GSM398256 Martin_3d_rep2 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.9 97.1 GSM261070 Albina f-17 Control rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.8 95.7 GSM398260 Martin_5d_rep3 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.7 95.5 GSM398257 Martin_3d_rep3 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At4g02450, orthologous to the query gene, Contig1356_s_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.13 5.8 At4g02450 828006 glycine-rich protein F:molecular_function unknown;P:unknown;C:plasma membrane;BMOPFVA O.I. H.G. S.X.
0.40 50.8 At1g07660 837279 histone H4 F:DNA binding;P:nucleosome assembly;C:plasma membrane, chloroplast;MOPFV O.I. H.G. S.X.
0.40 50.8 At2g28740 817423 HIS4 histone 4 O.I. H.G. S.X.
0.11 4.1 At1g08780 837400 AIP3 (ABI3-INTERACTING PROTEIN 3) F:unfolded protein binding;P:protein folding;C:prefoldin complex;MFOPA O.I. H.G. S.X.
0.07 1.9 At4g17520 827467 nuclear RNA-binding protein, putative F:RNA binding;P:biological_process unknown;C:nucleus, peroxisome;MBOPFVA O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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