Co-expression analysis

Gene ID	Contig13546_at
Gene name
Homology with Arabidopsis	Similar to At3g62528: unknown protein (HF=3e+0)
Module size	6 genes
NF	0.23
%ile	29.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	69.7	0.94	Contig13546_at	Contig13546	-	-	3e+0	At3g62528	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.94	HI01B18w_s_at	HI01B18w	-	-	1e+0	At3g21270	ADOF2	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.95	Contig9429_s_at	Contig9429	-	-	6e-5	At2g37650	scarecrow-like transcription factor 9 (SCL9)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.96	Contig13282_at	Contig13282	-	-	5e-8	At1g30540	ATPase, BadF/BadG/BcrA/BcrD-type family	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.94	Contig4541_at	Contig4541	-	-	1e-4	At5g63980	SAL1	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.94	Contig10824_at	Contig10824	-	-	7e-2	At5g11350	endonuclease/exonuclease/phosphatase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.0	99.1	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.6	98.6	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.7	98.3	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM160823	19% SWC rep1	GSE6990	Barley drought stress
3.2	94.3	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM161221	cold treatment rep3	GSE6993	Barley low temperature stress
2.9	93.4	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the grape gene, 1607157_at, orthologous to the query gene, Contig13546_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	84.3	1607157_at	At3g62528	-	-	3e+0	At4g15520	tRNA/rRNA methyltransferase (SpoU) family protein	O.I.	H.G.	S.X.	Please select
0.55	77.3	1608006_at	At3g62528	hypothetical protein LOC100246836	-	5e-10	At2g46670	pseudo-response regulator, putative / timing of CAB expression 1-like protein, putative	O.I.	H.G.	S.X.	Please select
0.46	66.5	1608759_at	At3g62528	hypothetical protein LOC100250295	-	3e-14	At2g47600	ATMHX (ARABIDOPSIS THALIANA MAGNESIUM/PROTON EXCHANGER)	O.I.	H.G.	S.X.	Please select
0.44	64.1	1613933_at	At3g62528	hypothetical protein LOC100247785	-	9e-1	At1g72020	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	15.6	1620042_at	At3g62528	hypothetical protein LOC100243431	-	3e-76	At2g47390	serine-type endopeptidase/ serine-type peptidase	O.I.	H.G.	S.X.	Please select
0.06	6.8	1614801_at	At3g62528	hypothetical protein LOC100250155	-	1e-3	At3g58570	DEAD box RNA helicase, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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