Co-expression analysis

Gene ID	Contig13546_at
Gene name
Homology with Arabidopsis	Similar to At3g62528: unknown protein (HF=3e+0)
Module size	6 genes
NF	0.23
%ile	29.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	69.7	0.94	Contig13546_at	Contig13546	-	-	3e+0	At3g62528	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.94	HI01B18w_s_at	HI01B18w	-	-	1e+0	At3g21270	ADOF2	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.95	Contig9429_s_at	Contig9429	-	-	6e-5	At2g37650	scarecrow-like transcription factor 9 (SCL9)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.96	Contig13282_at	Contig13282	-	-	5e-8	At1g30540	ATPase, BadF/BadG/BcrA/BcrD-type family	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.94	Contig4541_at	Contig4541	-	-	1e-4	At5g63980	SAL1	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.94	Contig10824_at	Contig10824	-	-	7e-2	At5g11350	endonuclease/exonuclease/phosphatase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.0	99.1	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.6	98.6	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.7	98.3	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM160823	19% SWC rep1	GSE6990	Barley drought stress
3.2	94.3	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM161221	cold treatment rep3	GSE6993	Barley low temperature stress
2.9	93.4	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.78982.1.S1_at, orthologous to the query gene, Contig13546_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.94	98.9	TaAffx.78982.1.S1_at	At3g62528	-	-	3e+0	At5g02220	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	Ta.25308.2.S1_at	At3g62528	-	-	3e-7	At5g41800	amino acid transporter family protein	O.I.	H.G.	S.X.	Please select
0.36	51.9	Ta.29509.2.S1_x_at	At3g62528	-	-	2e-5	At1g63960	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	TaAffx.78422.1.S1_at	At3g62528	-	-	4e+0	At3g48490	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	48.1	Ta.6979.2.S1_at	At3g62528	-	-	8e-11	At1g13640	phosphatidylinositol 3- and 4-kinase family protein	O.I.	H.G.	S.X.	Please select
0.34	48.1	Ta.3064.3.S1_a_at	At3g62528	-	-	1e+0	At3g47710	bHLH family protein	O.I.	H.G.	S.X.	Please select
0.34	48.1	TaAffx.109311.1.S1_at	At3g62528	-	-	4e-2	At3g27540	glycosyl transferase family 17 protein	O.I.	H.G.	S.X.	Please select
0.34	48.1	Ta.3064.2.S1_at	At3g62528	-	-	3e-4	At2g47700	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	Ta.29509.2.S1_at	At3g62528	-	-	2e-5	At1g63960	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	44.4	TaAffx.60138.1.S1_at	At3g62528	-	-	2e-2	At1g01650	aspartic-type endopeptidase/ peptidase	O.I.	H.G.	S.X.	Please select
0.29	39.2	TaAffx.83835.1.S1_at	At3g62528	-	-	3e-15	At1g01740	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	Ta.7147.3.S1_a_at	At3g62528	-	-	5e-3	At3g54300	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	O.I.	H.G.	S.X.	Please select
0.29	39.2	TaAffx.114098.1.S1_at	At3g62528	-	-	8e-7	At1g22940	TH1 (THIAMINE REQUIRING 1)	O.I.	H.G.	S.X.	Please select
0.27	35.6	TaAffx.114303.1.S1_s_at	At3g62528	-	-	1e-15	At3g06170	TMS membrane family protein / tumour differentially expressed (TDE) family protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	TaAffx.117450.2.S1_s_at	At3g62528	-	-	2e-8	At4g10030	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	TaAffx.128527.1.S1_at	At3g62528	-	-	7e-3	At1g45249	ABF2 (ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 2)	O.I.	H.G.	S.X.	Please select
0.25	32.1	TaAffx.57090.1.S1_at	At3g62528	-	-	3e-7	At3g13440	methyltransferase/ nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.25	32.1	TaAffx.113489.1.S1_s_at	At3g62528	-	-	5e-10	At3g12800	SDRB (SHORT-CHAIN DEHYDROGENASE-REDUCTASE B)	O.I.	H.G.	S.X.	Please select
0.25	32.1	TaAffx.129193.1.S1_s_at	At3g62528	-	-	2e-9	At2g35680	dual specificity protein phosphatase family protein	O.I.	H.G.	S.X.	Please select
0.24	30.3	TaAffx.32532.1.S1_s_at	At3g62528	-	-	8e-1	At5g19370	rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein	O.I.	H.G.	S.X.	Please select
0.24	30.3	Ta.18508.1.S1_a_at	At3g62528	-	-	4e-1	At4g37470	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.	Please select
0.24	30.3	Ta.7147.3.S1_x_at	At3g62528	-	-	5e-3	At3g54300	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	O.I.	H.G.	S.X.	Please select
0.23	29.0	Ta.3239.2.A1_a_at	At3g62528	-	-	4e+0	At4g09775	-	O.I.	H.G.	S.X.	Please select
0.23	29.0	Ta.3348.2.S1_a_at	At3g62528	-	-	6e-27	At2g02760	ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2)	O.I.	H.G.	S.X.	Please select
0.22	27.1	Ta.664.2.S1_at	At3g62528	-	-	7e+0	At4g00220	JLO (JAGGED LATERAL ORGANS)	O.I.	H.G.	S.X.	Please select
0.21	25.5	TaAffx.50947.1.S1_at	At3g62528	-	-	2e-5	At1g71020	armadillo/beta-catenin repeat family protein / U-box domain-containing protein	O.I.	H.G.	S.X.	Please select
0.21	25.5	Ta.7168.2.S1_a_at	At3g62528	-	-	8e-2	At5g52020	AP2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.20	24.0	Ta.6130.3.S1_a_at	At3g62528	-	-	4e-3	At3g03890	FMN binding	O.I.	H.G.	S.X.	Please select
0.20	24.0	Ta.5106.3.S1_a_at	At3g62528	-	-	4e+0	At5g07520	GRP18 (GLYCINE-RICH PROTEIN 18)	O.I.	H.G.	S.X.	Please select
0.19	22.4	TaAffx.110040.1.S1_at	At3g62528	-	-	4e+0	At5g05830	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.19	22.4	TaAffx.128567.1.S1_at	At3g62528	-	-	2e+0	At3g09050	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	21.0	TaAffx.54509.1.S1_at	At3g62528	-	-	2e-2	At4g38250	amino acid transporter family protein	O.I.	H.G.	S.X.	Please select
0.16	18.2	TaAffx.52007.1.S1_at	At3g62528	-	-	3e+0	At2g45403	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	18.2	Ta.7861.2.S1_a_at	At3g62528	-	-	9e-1	At4g19640	ARA7	O.I.	H.G.	S.X.	Please select
0.16	18.2	Ta.7329.2.S1_at	At3g62528	-	-	3e-1	At1g52342	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	15.8	Ta.22953.1.S1_a_at	At3g62528	-	-	9e+0	At5g48540	33 kDa secretory protein-related	O.I.	H.G.	S.X.	Please select
0.13	14.6	Ta.460.1.S1_a_at	At3g62528	-	-	1e-4	At4g16580	catalytic	O.I.	H.G.	S.X.	Please select
0.12	13.3	TaAffx.121469.1.S1_at	At3g62528	-	-	1e+0	At3g50550	unknown protein	O.I.	H.G.	S.X.	Please select
0.11	12.4	Ta.9297.1.S1_at	At3g62528	-	-	2e+0	At2g07669	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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