CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig13546_at

Gene name
Homology with Arabidopsis Similar to At3g62528: unknown protein (HF=3e+0)

Module size 6 genes

NF 0.23

%ile 29.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 69.7 0.94 Contig13546_at Contig13546 - - 3e+0 At3g62528 unknown protein O.I. H.G. S.X.
0.50 66.9 0.94 HI01B18w_s_at HI01B18w - - 1e+0 At3g21270 ADOF2 O.I. H.G. S.X.
0.44 58.9 0.95 Contig9429_s_at Contig9429 - - 6e-5 At2g37650 scarecrow-like transcription factor 9 (SCL9) O.I. H.G. S.X.
0.36 47.1 0.96 Contig13282_at Contig13282 - - 5e-8 At1g30540 ATPase, BadF/BadG/BcrA/BcrD-type family O.I. H.G. S.X.
0.27 32.1 0.94 Contig4541_at Contig4541 - - 1e-4 At5g63980 SAL1 O.I. H.G. S.X.
0.07 5.8 0.94 Contig10824_at Contig10824 - - 7e-2 At5g11350 endonuclease/exonuclease/phosphatase family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.0 99.1 GSM238410 Pericarp 8DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
7.6 98.6 GSM238408 Pericarp 4DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
6.7 98.3 GSM238411 Pericarp 8DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
4.4 96.6 GSM238430 Embryo 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.2 96.3 GSM160823 19% SWC rep1 GSE6990 Barley drought stress
3.2 94.3 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.1 94.1 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.0 93.8 GSM238438 Embryo 72 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
2.9 93.4 GSM161221 cold treatment rep3 GSE6993 Barley low temperature stress
2.9 93.4 GSM238409 Pericarp 4DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.10373.1.S1_at, orthologous to the query gene, Contig13546_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.69 86.8 GmaAffx.10373.1.S1_at At3g62528 - - 2e-6 At2g18480 mannitol transporter, putative O.I. H.G. S.X.
0.50 71.7 Gma.2842.1.S1_at At3g62528 - - 4e+0 Atcg00300 - O.I. H.G. S.X.
0.42 59.3 GmaAffx.70005.1.S1_s_at At3g62528 - - 3e-10 At1g06620 2-oxoglutarate-dependent dioxygenase, putative O.I. H.G. S.X.
0.40 57.1 Gma.10216.2.S1_at At3g62528 - - 1e+0 At1g31760 SWIB complex BAF60b domain-containing protein O.I. H.G. S.X.
0.35 48.6 GmaAffx.38558.1.S1_at At3g62528 - - 6e-18 At2g19900 ATNADP-ME1 (NADP-malic enzyme 1) O.I. H.G. S.X.
0.31 42.2 GmaAffx.47590.1.S1_at At3g62528 - - 6e+0 At5g25480 DNMT2 (DNA METHYLTRANSFERASE-2) O.I. H.G. S.X.
0.31 42.2 Gma.16825.1.S1_at At3g62528 serine/threonine kinase-related protein - 3e-14 At4g11530 kinase O.I. H.G. S.X.
0.29 39.0 GmaAffx.83417.1.S1_at At3g62528 - - 1e+0 At5g20130 unknown protein O.I. H.G. S.X.
0.16 19.7 GmaAffx.92897.1.S1_s_at At3g62528 - - 5e-31 At3g23490 CYN (CYANASE) O.I. H.G. S.X.
0.14 17.5 GmaAffx.75948.1.S1_at At3g62528 - - 6e-15 At1g08470 strictosidine synthase family protein O.I. H.G. S.X.
0.14 17.5 GmaAffx.88320.1.S1_at At3g62528 - - 5e+0 At5g09490 40S ribosomal protein S15 (RPS15B) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage