Co-expression analysis

Gene ID Contig13544_at
Gene name
Homology with ArabidopsisSimilar to At1g19300: PARVUS (PARVUS) (HF=5e-2)
Module size 6 genes
NF 0.53
%ile 74.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.94Contig13544_atContig13544--5e-2At1g19300PARVUS (PARVUS)O.I.H.G.S.X.
0.5572.00.94Contig9526_atContig9526--2e-6At4g34040zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.5066.90.94Contig1955_s_atContig1955--5e-1At5g17950unknown proteinO.I.H.G.S.X.
0.4053.10.93Contig16555_atContig16555--6e-3At3g12685-O.I.H.G.S.X.
0.4053.10.95Contig6370_atContig6370--9e-9At3g12390nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putativeO.I.H.G.S.X.
0.3849.50.94HV_CEa0006M01r2_atHV_CEa0006M01r2--3e-1At2g27750nucleolar matrix protein-relatedO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
27.199.8GSM261042before 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
21.299.7GSM261043before 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
20.499.7GSM261044before 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
7.798.6GSM431549pathogen isolates: Polymyxa graminis - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
6.498.1GSM431546pathogen isolates: Mock - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
5.497.5GSM261036Dicktoo-subzero-rep1GSE10329Low temperature stress in cv. DicktooLink to GEO
4.296.3GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
4.196.2GSM261038Dicktoo-subzero-rep3GSE10329Low temperature stress in cv. DicktooLink to GEO
3.595.1GSM261032Dicktoo control-rep3GSE10329Low temperature stress in cv. DicktooLink to GEO
3.595.1GSM261033Dicktoo-chilling-rep1GSE10329Low temperature stress in cv. DicktooLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os06g0247000, orthologous to the query gene, Contig13544_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6787.2Os06g0247000At1g19300-Avr9/Cf-9 rapidly elicited protein 2311e-2At3g50760GATL2 (Galacturonosyltransferase-like 2)O.I.H.G.S.X.
0.6787.2Os08g0502400At1g19300-Beta-Ig-H3/fasciclin domain containing protein3e-2At2g04780FLA7 (FASCICLIN-LIKE ARABINOOGALACTAN 7)O.I.H.G.S.X.
0.4051.1Os10g0562700At1g19300-Protein of unknown function DUF632 domaincontaining protein2e-11At1g02110proline-rich family proteinO.I.H.G.S.X.
0.1611.3Os09g0249400At1g19300-Protein of unknown function DUF588 family protein6e-3At4g11300unknown proteinO.I.H.G.S.X.
0.073.7Os01g0841100At1g19300-Beta-Ig-H3/fasciclin domain containing protein1e-7At3g46550SOS5 (salt overly sensitive 5)O.I.H.G.S.X.
0.021.0Os06g0712500At1g19300-Glycosyl transferase, family 8 protein2e-24At3g61130GAUT1 (GALACTURONOSYLTRANSFERASE 1)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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