Co-expression analysis

Gene ID	Contig13544_at
Gene name
Homology with Arabidopsis	Similar to At1g19300: PARVUS (PARVUS) (HF=5e-2)
Module size	6 genes
NF	0.53
%ile	74.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.94	Contig13544_at	Contig13544	-	-	5e-2	At1g19300	PARVUS (PARVUS)	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.94	Contig9526_at	Contig9526	-	-	2e-6	At4g34040	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.94	Contig1955_s_at	Contig1955	-	-	5e-1	At5g17950	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.93	Contig16555_at	Contig16555	-	-	6e-3	At3g12685	-	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.95	Contig6370_at	Contig6370	-	-	9e-9	At3g12390	nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.94	HV_CEa0006M01r2_at	HV_CEa0006M01r2	-	-	3e-1	At2g27750	nucleolar matrix protein-related	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
27.1	99.8	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
21.2	99.7	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
20.4	99.7	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.7	98.6	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
6.4	98.1	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.4	97.5	GSM261036	Dicktoo-subzero-rep1	GSE10329	Low temperature stress in cv. Dicktoo
4.2	96.3	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
4.1	96.2	GSM261038	Dicktoo-subzero-rep3	GSE10329	Low temperature stress in cv. Dicktoo
3.5	95.1	GSM261032	Dicktoo control-rep3	GSE10329	Low temperature stress in cv. Dicktoo
3.5	95.1	GSM261033	Dicktoo-chilling-rep1	GSE10329	Low temperature stress in cv. Dicktoo

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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