Co-expression analysis

Gene ID	Contig13528_at
Gene name
Homology with Arabidopsis	Similar to At1g29690: CAD1 (constitutively activated cell death 1) (HF=9e-9)
Module size	6 genes
NF	0.60
%ile	82.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	74.3	0.96	Contig13528_at	Contig13528	-	-	9e-9	At1g29690	CAD1 (constitutively activated cell death 1)	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.96	Contig10891_s_at	Contig10891	-	-	7e-1	At3g50695	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.96	Contig10690_at	Contig10690	-	-	2e-5	At2g35530	bZIP transcription factor family protein	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.96	Contig10050_s_at	Contig10050	-	-	5e-2	At2g25052	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.96	Contig9559_at	Contig9559	-	-	2e-5	At3g13320	CAX2 (CATION EXCHANGER 2)	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.96	Contig10041_at	Contig10041	-	-	8e-29	At2g20280	zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.1	97.3	GSM372992	genotype: 11542 - pathogen isolates: K1 - time: 0 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.8	95.7	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
3.7	95.5	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
3.4	94.8	GSM282034	Malting_steeped_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.4	94.8	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
3.1	94.1	GSM372976	genotype: 11542 - pathogen isolates: 5874 - time: 0 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.1	94.1	GSM261057	Xantha b-12 Cotrol rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.1	94.1	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.0	93.8	GSM372997	genotype: 11542 - pathogen isolates: K1 - time: 8 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.0	93.8	GSM372940	genotype: Mla6 - pathogen isolates: 5874 - time: 0 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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