Co-expression analysis

Gene ID Contig13522_at
Gene name
Homology with ArabidopsisSimilar to At4g02630: protein kinase family protein (HF=4e-17)
Module size 6 genes
NF 0.47
%ile 65.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8092.50.96Contig13522_atContig13522--4e-17At4g02630protein kinase family proteinO.I.H.G.S.X.
0.5369.70.96Contig15831_atContig15831--1e+0At3g15190chloroplast 30S ribosomal protein S20, putativeO.I.H.G.S.X.
0.5066.90.96Contig5626_s_atContig5626--2e+0At5g50260cysteine proteinase, putativeO.I.H.G.S.X.
0.5066.90.96Contig9191_atContig9191--2e+0At2g18200unknown proteinO.I.H.G.S.X.
0.4458.90.96Contig10540_atContig10540--7e-8At3g57890tubulin-specific chaperone C-relatedO.I.H.G.S.X.
0.2122.60.96rbah59f07_s_atrbah59f07--4e+0At3g24160PMP (PUTATIVE TYPE 1 MEMBRANE PROTEIN)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.198.0GSM440966Stressed palea_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
5.097.2GSM440960Stressed lemma_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
5.097.2GSM398251Martin_0d_rep3GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
4.696.8GSM440968Stressed palea_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.995.8GSM282040Malting_kilned_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.695.3GSM398264HS41-1_1d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
3.595.1GSM440962Stressed lemma_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.595.1GSM261076Albina e-16 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.294.3GSM261025ABA-Early-rep2GSE10328ABA experimentLink to GEO
3.294.3GSM160815drought control rep3GSE6990Barley drought stressLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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