Co-expression analysis

Gene ID	Contig13509_at
Gene name
Homology with Arabidopsis	Similar to At5g54600: 50S ribosomal protein L24, chloroplast (CL24) (HF=5e+0)
Module size	6 genes
NF	0.40
%ile	54.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.94	Contig13509_at	Contig13509	-	-	5e+0	At5g54600	50S ribosomal protein L24, chloroplast (CL24)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.93	Contig15319_at	Contig15319	-	-	7e-1	At5g27830	-	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.95	Contig17645_at	Contig17645	-	-	2e+0	At3g56810	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.96	Contig5979_at	Contig5979	-	-	4e-15	At5g20080	NADH-cytochrome b5 reductase, putative	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.96	EBro02_SQ008_P15_at	EBro02_SQ008_P15	-	-	1e+1	At5g43211	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.96	HVSMEa0012H02f2_at	HVSMEa0012H02f2	-	-	4e+0	At3g02555	unknown protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.1	98.0	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM372990	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.2	96.3	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
4.1	96.2	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.5	95.1	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.4	94.8	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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