CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig13428_at

Gene name
Homology with Arabidopsis Similar to At3g17160: unknown protein (HF=6e-5)

Module size 6 genes

NF 0.59

%ile 81.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 80.3 0.92 Contig13428_at Contig13428 - - 6e-5 At3g17160 unknown protein O.I. H.G. S.X.
0.63 80.3 0.91 Contig13965_at Contig13965 - - 7e+0 At5g55056 unknown protein O.I. H.G. S.X.
0.60 77.3 0.92 Contig21865_at Contig21865 - - 9e-1 At5g45870 Bet v I allergen family protein O.I. H.G. S.X.
0.50 66.9 0.92 Contig14053_at Contig14053 - - 3e-1 At2g45760 BAP2 (BON ASSOCIATION PROTEIN 2) O.I. H.G. S.X.
0.50 66.9 0.95 Contig14949_at Contig14949 - - 3e-2 At3g19100 calcium-dependent protein kinase, putative / CDPK, putative O.I. H.G. S.X.
0.40 53.1 0.93 Contig12506_at Contig12506 - - 2e+0 At4g31740 - O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.63	80.3	0.92	Contig13428_at	Contig13428	-	-	6e-5	At3g17160	unknown protein	O.I.	H.G.	S.X.
0.63	80.3	0.91	Contig13965_at	Contig13965	-	-	7e+0	At5g55056	unknown protein	O.I.	H.G.	S.X.
0.60	77.3	0.92	Contig21865_at	Contig21865	-	-	9e-1	At5g45870	Bet v I allergen family protein	O.I.	H.G.	S.X.
0.50	66.9	0.92	Contig14053_at	Contig14053	-	-	3e-1	At2g45760	BAP2 (BON ASSOCIATION PROTEIN 2)	O.I.	H.G.	S.X.
0.50	66.9	0.95	Contig14949_at	Contig14949	-	-	3e-2	At3g19100	calcium-dependent protein kinase, putative / CDPK, putative	O.I.	H.G.	S.X.
0.40	53.1	0.93	Contig12506_at	Contig12506	-	-	2e+0	At4g31740	-	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.1	0.90	Contig23185_at	Contig23185	-	-	3e-2	At3g26790	FUS3 (FUSCA 3)	O.I.	H.G.	S.X.
0.60	77.3	0.88	Contig11481_at	Contig11481	-	-	1e+0	At2g26670	TED4 (REVERSAL OF THE DET PHENOTYPE 4)	O.I.	H.G.	S.X.
0.50	66.9	0.84	Contig25355_at	Contig25355	-	-	4e-17	At1g30890	integral membrane HRF1 family protein	O.I.	H.G.	S.X.
0.50	66.9	0.93	HX07O15r_at	HX07O15r	-	-	4e+0	At5g05470	EIF2 ALPHA	O.I.	H.G.	S.X.
0.47	62.2	0.85	Contig24717_at	Contig24717	-	-	4e+0	At4g38570	PIS2 (PROBABLE CDP-DIACYLGLYCEROL--INOSITOL 3-PHOSPHATIDYLTRANSFERASE 2)	O.I.	H.G.	S.X.
0.40	53.1	0.88	Contig15259_at	Contig15259	-	-	1e-1	At5g66040	STR16 (SULFURTRANSFERASE PROTEIN 16)	O.I.	H.G.	S.X.
0.40	53.1	0.91	Contig26019_at	Contig26019	-	-	3e+0	At2g29650	PHT4	O.I.	H.G.	S.X.
0.40	53.1	0.92	HO14K20S_at	HO14K20S	-	-	8e-1	At2g16930	ribosomal protein L27 family protein	O.I.	H.G.	S.X.
0.40	53.1	0.93	Contig26369_at	Contig26369	-	-	4e+0	At4g02620	vacuolar ATPase subunit F family protein	O.I.	H.G.	S.X.
0.39	50.5	0.84	Contig25212_at	Contig25212	-	-	1e+0	At1g08470	strictosidine synthase family protein	O.I.	H.G.	S.X.
0.38	49.5	0.88	Contig7603_at	Contig7603	-	-	4e-21	At2g29390	SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2)	O.I.	H.G.	S.X.
0.36	47.1	0.89	Contig15468_at	Contig15468	-	-	2e-4	At5g56140	KH domain-containing protein	O.I.	H.G.	S.X.
0.36	47.1	0.89	Contig12820_at	Contig12820	-	-	2e-1	At4g33580	carbonic anhydrase family protein / carbonate dehydratase family protein	O.I.	H.G.	S.X.
0.33	42.6	0.83	Contig13990_at	Contig13990	-	-	3e+0	At4g04745	unknown protein	O.I.	H.G.	S.X.
0.33	42.6	0.86	Contig10552_at	Contig10552	-	-	1e+0	At4g18070	unknown protein	O.I.	H.G.	S.X.
0.33	42.6	0.86	HW08A17u_at	HW08A17u	-	-	4e+0	At1g32540	LOL1 (LSD ONE LIKE 1)	O.I.	H.G.	S.X.
0.32	40.3	0.88	HO14H22S_s_at	HO14H22S	-	-	2e-1	At3g06080	unknown protein	O.I.	H.G.	S.X.
0.31	38.6	0.90	Contig13884_at	Contig13884	-	-	3e-5	At2g37510	RNA-binding protein, putative	O.I.	H.G.	S.X.
0.27	32.1	0.89	Contig6674_at	Contig6674	-	-	7e-20	At4g30810	scpl29 (serine carboxypeptidase-like 29)	O.I.	H.G.	S.X.
0.27	32.1	0.91	Contig13768_at	Contig13768	-	-	8e-3	At5g03030	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.
0.25	28.9	0.85	Contig5387_at	Contig5387	-	-	1e-3	At5g02530	RNA and export factor-binding protein, putative	O.I.	H.G.	S.X.
0.25	28.9	0.90	HY10D11u_at	HY10D11u	-	-	4e+0	At1g71030	MYBL2 (ARABIDOPSIS MYB-LIKE 2)	O.I.	H.G.	S.X.
0.25	28.9	0.92	HVSMEg0007J08r2_at	HVSMEg0007J08r2	-	-	5e+0	At3g58760	ankyrin protein kinase, putative	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.4 98.5 GSM238433 Embryo 0 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
6.7 98.3 GSM238434 Embryo 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
6.3 98.1 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.7 96.9 GSM238435 Embryo 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
4.5 96.7 GSM238432 Embryo 0 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.5 96.7 GSM238429 Embryo 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
4.1 96.2 GSM238430 Embryo 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.0 96.0 GSM440960 Stressed lemma_Rep1 GSE17669 Gene expression in the barley spike during drought stress
3.6 95.3 GSM146379 Maythorpe shoot Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.2 94.3 GSM146373 Golden Promise shoot Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
7.4	98.5	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.7	98.3	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.3	98.1	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.7	96.9	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.6	95.3	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.2	94.3	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Contig13428_at
Gene name
Homology with Arabidopsis	Similar to At3g17160: unknown protein (HF=6e-5)
Module size	6 genes
NF	0.59
%ile	81.4

Co-expression analysis

Gene ID Contig13428_at Gene name Homology with ArabidopsisSimilar to At3g17160: unknown protein (HF=6e-5) Module size 6 genes NF 0.59 %ile 81.4

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Contig13428_at

Gene name
Homology with Arabidopsis Similar to At3g17160: unknown protein (HF=6e-5)

Module size 6 genes

NF 0.59

%ile 81.4

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays