Co-expression analysis

Gene ID	Contig13428_at
Gene name
Homology with Arabidopsis	Similar to At3g17160: unknown protein (HF=6e-5)
Module size	6 genes
NF	0.59
%ile	81.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	80.3	0.92	Contig13428_at	Contig13428	-	-	6e-5	At3g17160	unknown protein	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.91	Contig13965_at	Contig13965	-	-	7e+0	At5g55056	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.92	Contig21865_at	Contig21865	-	-	9e-1	At5g45870	Bet v I allergen family protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.92	Contig14053_at	Contig14053	-	-	3e-1	At2g45760	BAP2 (BON ASSOCIATION PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.95	Contig14949_at	Contig14949	-	-	3e-2	At3g19100	calcium-dependent protein kinase, putative / CDPK, putative	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.93	Contig12506_at	Contig12506	-	-	2e+0	At4g31740	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.4	98.5	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.7	98.3	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.3	98.1	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.7	96.9	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.6	95.3	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.2	94.3	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

A co-expression module including the maize gene, Zm.11927.1.A1_at, orthologous to the query gene, Contig13428_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.95	99.6	Zm.11927.1.A1_at	At3g17160	-	-	1e+0	At4g31360	selenium binding	O.I.	H.G.	S.X.	Please select
0.48	61.3	Zm.12014.1.A1_at	At3g17160	adenosine 5'-phosphosulfate reductase 1	-	2e-1	At1g62180	APR2 (5'ADENYLYLPHOSPHOSULFATE REDUCTASE 2)	O.I.	H.G.	S.X.	Please select
0.47	59.9	Zm.19297.1.A1_at	At3g17160	hypothetical protein LOC100193577	-	2e-2	At3g49800	BSD domain-containing protein	O.I.	H.G.	S.X.	Please select
0.39	45.6	Zm.2157.5.A1_x_at	At3g17160	ribosomal protein S11	-	2e-35	At5g23740	RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA)	O.I.	H.G.	S.X.	Please select
0.36	41.3	Zm.1228.2.A1_at	At3g17160	Hypothetical protein LOC100191844	-	1e-34	At5g10840	endomembrane protein 70, putative	O.I.	H.G.	S.X.	Please select
0.35	38.9	Zm.5155.1.S1_at	At3g17160	hypothetical protein LOC100193357	-	7e-20	At5g27740	EMB2775 (EMBRYO DEFECTIVE 2775)	O.I.	H.G.	S.X.	Please select
0.33	36.0	Zm.564.1.S1_a_at	At3g17160	glutathione S-transferase GST 39	-	3e-2	At2g36640	ATECP63 (EMBRYONIC CELL PROTEIN 63)	O.I.	H.G.	S.X.	Please select
0.32	33.4	Zm.13885.1.A1_s_at	At3g17160	R2R3MYB-domain protein	-	2e-1	At3g46130	MYB111 (MYB DOMAIN PROTEIN 111)	O.I.	H.G.	S.X.	Please select
0.32	33.4	Zm.3978.1.A1_at	At3g17160	-	-	3e-17	At1g70320	UPL2 (UBIQUITIN-PROTEIN LIGASE 2)	O.I.	H.G.	S.X.	Please select
0.32	33.4	Zm.858.1.A1_at	At3g17160	hypothetical protein LOC100216691	-	2e+0	At4g12350	MYB42 (myb domain protein 42)	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.3263.1.A1_at	At3g17160	nudix hydrolase 13	-	2e+0	At3g52525	OFP6 (OVATE FAMILY PROTEIN 6)	O.I.	H.G.	S.X.	Please select
0.28	28.1	Zm.4011.1.S1_at	At3g17160	-	-	3e-54	At5g20570	RBX1 (RING-BOX 1)	O.I.	H.G.	S.X.	Please select
0.28	28.1	Zm.18504.1.A1_at	At3g17160	hypothetical protein LOC100279335	-	2e+0	At4g12490	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.28	28.1	Zm.17983.1.A1_at	At3g17160	hypothetical protein LOC100276768	-	1e+0	At2g40910	F-box protein-related	O.I.	H.G.	S.X.	Please select
0.28	28.1	Zm.13645.1.S1_at	At3g17160	tryptophan synthase alpha	-	4e-4	At3g54640	TSA1 (TRYPTOPHAN SYNTHASE ALPHA CHAIN)	O.I.	H.G.	S.X.	Please select
0.27	24.6	Zm.13869.1.S1_x_at	At3g17160	R2R3MYB-domain protein	-	4e+0	At2g04910	glycosyl hydrolase family protein 17	O.I.	H.G.	S.X.	Please select
0.27	24.6	Zm.5462.1.A1_at	At3g17160	-	-	7e-1	At1g08125	Expressed protein	O.I.	H.G.	S.X.	Please select
0.26	22.7	Zm.15438.1.A1_at	At3g17160	hypothetical protein LOC100277643	-	3e+0	At5g59950	RNA and export factor-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.26	22.7	Zm.13193.1.A1_at	At3g17160	-	-	4e-6	At4g14990	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	22.7	Zm.15722.2.A1_at	At3g17160	hypothetical protein LOC100273877	-	2e+0	At3g06110	MKP2 (MAPK PHOSPHATASE 2)	O.I.	H.G.	S.X.	Please select
0.25	21.3	Zm.6329.1.A1_at	At3g17160	-	-	1e-1	At5g24313	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	21.3	Zm.7282.1.A1_at	At3g17160	ferredoxin2	-	3e-2	At1g10960	ATFD1 (FERREDOXIN 1)	O.I.	H.G.	S.X.	Please select
0.24	19.8	Zm.2614.2.S1_at	At3g17160	-	-	2e+0	At5g17930	binding / protein binding	O.I.	H.G.	S.X.	Please select
0.23	18.6	Zm.14133.1.A1_at	At3g17160	gibberellin receptor GID1L2	-	7e+0	At4g03113	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	14.2	Zm.11806.1.S1_at	At3g17160	thylakoid lumenal 16.5 kDa protein	-	6e+0	At5g42146	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	12.8	Zm.7463.1.A1_at	At3g17160	hypothetical protein LOC100276250	-	2e+0	At1g21090	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.19	12.8	Zm.4505.1.A1_at	At3g17160	-	-	1e+0	At1g54110	cation exchanger, putative (CAX10)	O.I.	H.G.	S.X.	Please select
0.19	12.8	Zm.17516.1.S1_at	At3g17160	hypothetical protein LOC100216611	-	3e-12	At5g63650	SNRK2.5 (SNF1-RELATED PROTEIN KINASE 2.5)	O.I.	H.G.	S.X.	Please select
0.15	8.6	Zm.11238.1.A1_at	At3g17160	-	-	5e-3	At5g39100	GLP6 (GERMIN-LIKE PROTEIN 6)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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