Co-expression analysis

Gene ID Contig1339_at
Gene name
Homology with ArabidopsisSimilar to At3g56800: CAM3 (CALMODULIN 3) (HF=4e-66)
Module size 15 genes
NF 0.82
%ile 97.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7991.40.88Contig1339_atContig1339--4e-66At3g56800CAM3 (CALMODULIN 3)O.I.H.G.S.X.
0.9799.60.87Contig16285_atContig16285--8e-2At4g31390ABC1 family proteinO.I.H.G.S.X.
0.9799.60.90Contig8003_atContig8003--2e+0At5g22100RNA cyclase family proteinO.I.H.G.S.X.
0.9799.60.90Contig11985_atContig11985--3e-2At5g18310unknown proteinO.I.H.G.S.X.
0.9398.70.87Contig8647_s_atContig8647--4e-19At5g43930transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.9095.70.84HV_CEb0010M11f_atHV_CEb0010M11f--5e-61Atcg01060-O.I.H.G.S.X.
0.9095.70.84HZ49N13r_atHZ49N13r--3e+0At5g47320RPS19 (RIBOSOMAL PROTEIN S19)O.I.H.G.S.X.
0.8394.00.88HZ01L11u_atHZ01L11u--3e+0At4g26240unknown proteinO.I.H.G.S.X.
0.7790.80.87Contig17811_atContig17811--4e+0At2g05590-O.I.H.G.S.X.
0.7388.70.88Contig9574_atContig9574--8e-9At1g17330metal-dependent phosphohydrolase HD domain-containing protein-relatedO.I.H.G.S.X.
0.7388.70.89Contig3729_atContig3729--7e+0At5g60560F-box family proteinO.I.H.G.S.X.
0.6985.50.89Contig10807_atContig10807--1e-1At4g22610protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.6985.50.83Contig15844_atContig15844--2e-10At3g212404CL2 (4-COUMARATE:COA LIGASE 2)O.I.H.G.S.X.
0.6784.70.90Contig12675_s_atContig12675--1e+0At4g28150unknown proteinO.I.H.G.S.X.
0.5674.30.83Contig3728_atContig3728--9e-28At3g62560GTP-binding protein, putativeO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.998.9GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.798.6GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.998.3GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.397.4GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.796.9GSM238422Endosperm 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.096.0GSM215730Control (DMSO) treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
3.895.7GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
3.795.5GSM261042before 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.294.3GSM238424Endosperm 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.194.1GSM261043before 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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