Co-expression analysis

Gene ID	Contig13295_at
Gene name
Homology with Arabidopsis	Similar to At2g19750: 40S ribosomal protein S30 (RPS30A) (HF=5e-1)
Module size	16 genes
NF	0.44
%ile	60.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	88.7	0.76	Contig13295_at	Contig13295	-	-	5e-1	At2g19750	40S ribosomal protein S30 (RPS30A)	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.85	HA07k01r_at	HA07k01r	-	-	1e+0	At3g48640	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.87	HU14G08u_s_at	HU14G08u	-	-	3e-1	At5g38400	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.84	Contig9561_at	Contig9561	-	-	1e+1	At4g15780	ATVAMP724	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.88	HX05P09r_at	HX05P09r	-	-	9e-1	At5g60350	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.86	Contig2339_at	Contig2339	-	-	5e-12	At4g15000	60S ribosomal protein L27 (RPL27C)	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.86	Contig15427_at	Contig15427	-	-	7e+0	At4g29110	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.85	Contig15728_at	Contig15728	-	-	2e+0	At3g21215	RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.75	HU14G08u_at	HU14G08u	-	-	3e-1	At5g38400	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.87	Contig12675_s_at	Contig12675	-	-	1e+0	At4g28150	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.87	Contig19065_at	Contig19065	-	-	1e+0	At5g58787	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.81	Contig18424_at	Contig18424	-	-	2e-3	At5g48850	ATSDI1 (SULPHUR DEFICIENCY-INDUCED 1)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.80	Contig23287_at	Contig23287	-	-	7e+0	At4g17680	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.82	Contig18135_at	Contig18135	-	-	2e+0	At5g67300	MYBR1 (MYB DOMAIN PROTEIN R1)	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.82	Contig18089_at	Contig18089	-	-	5e+0	At4g31330	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.77	Contig5377_at	Contig5377	-	-	8e-1	At4g36250	ALDH3F1 (Aldehyde Dehydrogenase 3F1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
21.6	99.8	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
9.6	99.0	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.0	98.7	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.9	97.9	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.4	94.8	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.6	92.3	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.5	91.9	GSM372998	genotype: 11542 - pathogen isolates: K1 - time: 16 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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